Gene Information

Name : Sked_13190 (Sked_13190)
Accession : YP_003314093.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter periplasmic protein/surface adhesin
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1482904 - 1483866 bp
Length : 963 bp
Strand : +
Note : PFAM: Periplasmic solute binding protein family

DNA sequence : 
GTGGTCGCCGCGGTGGTCGCCAGCCTCGGGCTCCTCGCCACCGCTGCCTGCGCGCCGACCTCGAGCCCTCGTGAGGAGGC
CGGGGACCGGCTCCTGGTGCTCACCACCTTCACCGTGATCGCGGACATCGCCCGCGAGGTGGGCGGCGAGCACGTCTACG
TCGAGTCGGTCACCAAGGTCGGCGCCGAGATCCACGGCTACGAGCCCACGCCGGACGACCTGCGCCGCGCAGCGGACGCC
GACATCATCCTCGAGAACGGGCTCGGGCTCGAGGCCTGGTTCGAGCGCTTCGTGGCGGGCCTCGACGTCCCCACGGTCAC
GCTGTCCGACGGTGTCGAGCCGCTGCCCATCGTCGAGTCCGCCGGGACCGAGGGAGAGTCCCTGCCCGACGACGTCGCGG
GCTCGCCCAACCCCCACGCCTGGATGTCACCCGAGGTGGGCGCGCAGTACGCGCGCACCACCGCGGAGGCCCTCGCGGAG
GCCGACCCCGACAACGCGGCGGACTACCGGGCGAACGCCGAGCGCTATGCCGACGAGCTGCTCGCCATCGGGGAGACCCT
CTCCGAGGCCCTCGAGCAGATCCCGCAGGAGGCACGGGTGCTCGTCACCTGCGAGGGAGCGTTCTCGTACCTCGCCCGCG
ACGCAGGCCTCGACGAGGTCTACCTCTGGCCTGTCAATGTCGACGGCCAGGCCAGCCCGCGCCGCATGGAGGCCGCGATC
TCCGCGGTGCGTGACCGCGAGGTCCCCGCCGTGTTCTGCGAGTCCACGGTCTCGGCCGACGCCCAGAAGCAGGTGGCGCG
CGAGTCGGGCTCGACCTACGCCGGGGTGCTCTACGTCGACTCGCTCTCCGAGCCGGACGGTCCGGTCCCCACCTACAAGG
ACCTGCTGACGCACGACGTCGAGGTCATCATCGCCGGGCTCACCGGCACCCCGCTCCCGGACGCCCAGGAGGTCGGACGG
TGA

Protein sequence : 
MVAAVVASLGLLATAACAPTSSPREEAGDRLLVLTTFTVIADIAREVGGEHVYVESVTKVGAEIHGYEPTPDDLRRAADA
DIILENGLGLEAWFERFVAGLDVPTVTLSDGVEPLPIVESAGTEGESLPDDVAGSPNPHAWMSPEVGAQYARTTAEALAE
ADPDNAADYRANAERYADELLAIGETLSEALEQIPQEARVLVTCEGAFSYLARDAGLDEVYLWPVNVDGQASPRRMEAAI
SAVRDREVPAVFCESTVSADAQKQVARESGSTYAGVLYVDSLSEPDGPVPTYKDLLTHDVEVIIAGLTGTPLPDAQEVGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-61 50
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-61 50
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-61 50
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-61 50
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-61 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_13190 YP_003314093.1 metal ion ABC transporter periplasmic protein/surface adhesin BAC0349 Protein 7e-62 50
Sked_13190 YP_003314093.1 metal ion ABC transporter periplasmic protein/surface adhesin BAC0439 Protein 3e-58 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_13190 YP_003314093.1 metal ion ABC transporter periplasmic protein/surface adhesin VFG0525 Protein 6e-62 50