Gene Information

Name : Sked_12550 (Sked_12550)
Accession : YP_003314031.1
Strain : Sanguibacter keddieii DSM 10542
Genome accession: NC_013521
Putative virulence/resistance : Resistance
Product : chloramphenicol O-acetyltransferase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG4845
EC number : -
Position : 1424501 - 1425160 bp
Length : 660 bp
Strand : -
Note : PFAM: Chloramphenicol acetyltransferase

DNA sequence : 
ATGACCTCTCCCTCTGCGACCCCGATCGACCTCTCGACCTGGCCGAGGCGACAGCACTTCGAGCACTACCGCTCGGCCGT
CCCGTGCACCTACGCGCTCACCGTCGATCTGGACGCCACAGCATTCGTGGAGGCCCTCCGCGACTCCACCCGGAAGACCT
ACATCGCGCAAATCTGGGCCCTGGCGACAGCCGTGAACCAGCATGACGAGTTCCGCATGTGCCTCACGCCCGACGGCGCC
CCGGCCACCTGGCCCGTGGTCCACCCGTCGTTCACGGTCTTCAACGCGGCTCGGGAGACCTTCGCGAGCGTGTGGGCTCC
CTACGACCCGAGCTTTGCCGCGTTCCACGACACGGCGGCGGCCCTGCTGACCGAGCACCGCACGGCGACCGAGATGTTCC
CGCAGGGCCCACCGCCGGCGAACTCCTTCGACGTCTCGAGTCTCCCCTGGACGTCTTTCACCGGGTTCTCGCTCGCGGTC
CAGCCAGGGTTCGACCACCTGGCACCGATCTTCACGCTCGGTCGGTACGTCGAGCGGGAGGGCTCTCTCCGCCTGCCCGT
CGCACTGCAGGTGCACCACGCCGCAGCGGACGGCTTCCACGCAGCACGGCTCCTCGAGACCGTCCAAGGGCTGCTCCTCG
AGCCCGGGTGGGTGGCCTGA

Protein sequence : 
MTSPSATPIDLSTWPRRQHFEHYRSAVPCTYALTVDLDATAFVEALRDSTRKTYIAQIWALATAVNQHDEFRMCLTPDGA
PATWPVVHPSFTVFNAARETFASVWAPYDPSFAAFHDTAAALLTEHRTATEMFPQGPPPANSFDVSSLPWTSFTGFSLAV
QPGFDHLAPIFTLGRYVEREGSLRLPVALQVHHAAADGFHAARLLETVQGLLLEPGWVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
catA2 ACF06176.1 chloramphenicol acetyltransferase II Not tested Tn5036-like Protein 8e-40 42
cat YP_006098370.1 chloramphenicol acetyltransferase Not tested Tn2411 Protein 9e-36 41
cat CAJ77070.1 Chloramphenicol acetyltransferase Not tested AbaR1 Protein 6e-36 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sked_12550 YP_003314031.1 chloramphenicol O-acetyltransferase NC_010410.6002590.p0 Protein 3e-36 41
Sked_12550 YP_003314031.1 chloramphenicol O-acetyltransferase NC_011586.7045194.p0 Protein 3e-36 41
Sked_12550 YP_003314031.1 chloramphenicol O-acetyltransferase NC_010558.1.6276004. Protein 3e-36 41