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Name : Sked_11780 (Sked_11780) Accession : YP_003313955.1 Strain : Sanguibacter keddieii DSM 10542 Genome accession: NC_013521 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase (class II) Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1362427 - 1365870 bp Length : 3444 bp Strand : - Note : PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; Family of unknown function (DUF472); Family of unknown function (DUF471); Family of unknown function (DUF470); TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete DNA sequence : ATGAGACACCCGGCGACCGACCTGACCGACGACCCGGCCGCGCCCGTCGCGCACGGTGCGAGCAGCGTGCTGGGGGCCAC GCCGCCGAGCACGTCGACCACCACCGCGCCGCCCACCGCTCCCCGTGCCCCGTCAGAGCCGGTCACGCCCGGACGTCCCT GGGCCCGCACCGTCGCCAGGCTCACCGGGCGCGTCGTCCAGGCAGTCGCGATCTGGCTGCTCGTCGGGCTGCTGCTCCTG CCCTTCGCCCCGGGCGTCGTCCACGACGTCGGCCGGTGGCTGTCGGTCCTCAACGTCCCGAGCCAGCCGAGCTTCTTCAC GGTGATCCTCGTGGGGGTCGTGGCCTCGGGCCTGCTGCGCCGGCTCCGTGCCGCGCTGTGGTTCGTGATCCTCGCGTGGC AGGTGCCGCCGATGCTGCTCGCCGTCCTCACCGCGCTGGTCGTCGGGACCCGGCAGTCGACGCTCGCCGAGCTCGAGGTC CCGCCGGTCGACCTCGTCGCGGGCGTCGTGGCCCTCGTCGCCATCCCCGTCCTGGTGCTCTCCCGCGAGGCCTTCCCCGC CCGCCTGCGGCCGCGCGCGTGGCGCGGCGCAGTCCTGGTGATGCTCACCGGCGCGGTCGTGAGCACGGTCGTCGCGATGT CGCTCCTCCAGGTCGTCACGCACTCCCTCAGCGGACCGGCGGAGCGCCTGCGGTGGAGCCTCGCGAACGCTGTCGGCATC CACGTCGCGACGTCGCCCGCCGACCCGAGCGTCCCCGCGTGGGTCGCGGTCGTGGCGAGCGTGTTCTCCGCCGCCGGGCT GCTGCTCGGCATCGCCGTGTTCCTCCGATCAGCCGCGGGTGACCCCCGACGCCGCTCGGACGACGCGCTCGCCGTGCGAC GCCTGCTCCTCACCTACCCGTCGGCCGACTCCCTCGAGTACTTCGCGACGCGTGACGACAGGTCGGCGGTCCTGTCGGCC GACGGCGAAGCCGCCGTGTCCTACCGGGTGGTCTCGGGCGTGAGCCTCGCGGCCGGCGACCCGGTGGGTGACCCCGCCTC GTGGCCCGACGCCGTGGCCCGCTGGCTCGACCACACCCGCGCGCACGGGTGGATCCCCGCCGTCACCTCGGCCACGCCCG CCGGCGCACGCACCTACCGCGACGCCGGCCTGCACCCGCTGCCCATGGGCGACGAGGCGGTCGTCGAGACGCGCCGGTTC GACCTGTCGAACCCGGCGATGCGCCCGGTCCGGCGCAGCGTCGAGCGTGGGAAGACGGCCGGGTACACGGTGCGCGTCCG CCGGCAGTCTGCCGTCGCCCCGGCCGAGCTCGCCGGGCTCGTCGAGCTCGCCGAGACGTGGCGGCACGGCGACGAGCGCG GGTACTCCATGGCCCTCGACCGGCTCGGGTCGCCCGTCGACCCACGCGAGGTGGTCGTCACCGCGCACGACGCCGACGGG ACGTGCCAGGGGCTGCTGTCCTTCGTCCCGTGGGGACGGCGGGGGCTCTCGCTCGACGTGATGCGCCGGTCTCCCGACGC GGTCTCCGGAGTCACCGAGATCATGGTCGCGGGCCTGGTCGGCTCCTCCCGCGAGCTCGGCGTCGAGGAGGTGTCCATGA ACTTCGCGATGTTCCGGGAGACCTTCGAGCTCGGCGAGCGCATCGGTGCCACGCCGTTCCAGCGCCTCAACCGTCGCGTG CTGCTCCTCGCGTCCCGGTACTGGCAGCTCGAGCAGCTGTACCGGTCCAACGAGAAGTACCTGCCCGACTGGCGTCCGCG CCTGCTCTGCTACGAGGCCACCAGCCAGCTGACGCGCGTGATCTTCGCCCTCGGGCAGGCCGAGGGCTTCCTGCCCCGCA ACCCCCGCTGGTTCGCCGGCACGGACGAGCGCGAGGACGAGCCGAGCCTGAGCAGCCCCGAGCAGGCTGCCGAGGTCGTC GCGCAGGAGACCGCGCTGCTCGCGGTCGCCGGACCGGAGCGCCGCCTCACCGAGCAGCAGCGCAACCGGCACCGCAGGCT CGACGTGCTGCGCGCCGCCGGCATGGACCCCTACCCGGTGGCGGTCCCCCGCAGCTGCACGGTGGGCGAGGCGAGGGCCC TGGCAGTGCAGGTCGGGACGAGCCCCGAGACCGGGCCGGCGACGGAGCAGGTCGAGGTCGTGGGGCGCGTGGTGCGCCTG CGCGACCTCGGCGGCGTGCTGTTCGCCGTCCTGCGCGAGGGCACCGACCAGGTGCAGGCGATGCTCACGGCCGACGGGAG CGCCGACGTCGCGCTCTGGCGTCGCGCCGTCGACCTCGGCGACCAGGTCGGGGTCAGCGGGACCGTGACCCGCAGCCGCA GCGGCGAGCCGACGGTCCAGGTGACCTCCTGGCGGATGGCCGCGAAGGCGCTCACGCCGCCCCCGGACAAGCACCGCGGG CTCGTCGACCCGGAGACGCGACTGCGACTGCGCCACATGGACCTGGCCCTCGACGACCGCGCCCAGCAGCTGCTGCGCGC CCGGTCGGCCGCGGTGTGGTCGATGCGCAGCACGCTGGTCGGCCGCGACTTCCTCGAGGTCGAGACCCCGATCCTGCAGC GGATCCACGGTGGCGCCAACGCGCGCCCCTTCACCACGCACATCAACGCGTACGACATGGACCTGTACCTGCGGATCGCC CCCGAGCTCTACCTGAAGCAGCTCATGGTCGGTGGTGCGGGGCGGGTGTTCGAGCTCGGGCGCAACTTCCGCAACGAGGG CGTCGACAGCACGCACAACCCCGAGTTCACCTCGGTCGAGGCCTACGAGGCCTTCGGCGACTACCTCACCATGCGCGACC TCACCCGTGACCTCGTCGTGGCCGCGGCGGTCGCCGTGCACGGCGAGCCGGTCTCCCGCAGGGCCGACGGCACCGTGGTC CGTCTCGACGAGCCGTGGCCGAGCATCACGGTGCACGACGCGGTCTCCCGCGCCGTCGGGGTCGAGGTCACCCCTGACCT CCCGCTGGCCGACCTGCGCAAGGTCTGCGACTCCCACGACGTCGCCTGGGACGCCCAGGAGACCCACGGGGCGCTCGTCA CCGAGCTGTACGACAGGTTCGTCGAGGGGCAGACCGAGCGGCCGACCTTCTACATGGACTTCCCCGTGGAGACCTCCCCG CTGACCCGCCAGCACCGGCGCGACCCGCGCCTGGCCGAGCGGTGGGACCTCGTGGCCTTCGGCGCCGAGCTCGGCACCGC GTACTCCGAGCTCGTCGACCCGGTCGAGCAGCGGGCCCGGCTGACCCAGCAGTCGATCCTCGCGGCGGCGGGCGACCCCG AGGCCATGGAGGTCGACGAGGGCTTCCTCTCCGCCCTCGAGTTCGCCATGCCGCCGACCGGTGGTCTCGGCATCGGTGTG GACCGGGTGGTGATGATGCTCGTGGGCGCCTCGATCCGCGACACCCTGACCTTCCCGTTCATCCGTCCGACCGGTCGGGC CTGA Protein sequence : MRHPATDLTDDPAAPVAHGASSVLGATPPSTSTTTAPPTAPRAPSEPVTPGRPWARTVARLTGRVVQAVAIWLLVGLLLL PFAPGVVHDVGRWLSVLNVPSQPSFFTVILVGVVASGLLRRLRAALWFVILAWQVPPMLLAVLTALVVGTRQSTLAELEV PPVDLVAGVVALVAIPVLVLSREAFPARLRPRAWRGAVLVMLTGAVVSTVVAMSLLQVVTHSLSGPAERLRWSLANAVGI HVATSPADPSVPAWVAVVASVFSAAGLLLGIAVFLRSAAGDPRRRSDDALAVRRLLLTYPSADSLEYFATRDDRSAVLSA DGEAAVSYRVVSGVSLAAGDPVGDPASWPDAVARWLDHTRAHGWIPAVTSATPAGARTYRDAGLHPLPMGDEAVVETRRF DLSNPAMRPVRRSVERGKTAGYTVRVRRQSAVAPAELAGLVELAETWRHGDERGYSMALDRLGSPVDPREVVVTAHDADG TCQGLLSFVPWGRRGLSLDVMRRSPDAVSGVTEIMVAGLVGSSRELGVEEVSMNFAMFRETFELGERIGATPFQRLNRRV LLLASRYWQLEQLYRSNEKYLPDWRPRLLCYEATSQLTRVIFALGQAEGFLPRNPRWFAGTDEREDEPSLSSPEQAAEVV AQETALLAVAGPERRLTEQQRNRHRRLDVLRAAGMDPYPVAVPRSCTVGEARALAVQVGTSPETGPATEQVEVVGRVVRL RDLGGVLFAVLREGTDQVQAMLTADGSADVALWRRAVDLGDQVGVSGTVTRSRSGEPTVQVTSWRMAAKALTPPPDKHRG LVDPETRLRLRHMDLALDDRAQQLLRARSAAVWSMRSTLVGRDFLEVETPILQRIHGGANARPFTTHINAYDMDLYLRIA PELYLKQLMVGGAGRVFELGRNFRNEGVDSTHNPEFTSVEAYEAFGDYLTMRDLTRDLVVAAAVAVHGEPVSRRADGTVV RLDEPWPSITVHDAVSRAVGVEVTPDLPLADLRKVCDSHDVAWDAQETHGALVTELYDRFVEGQTERPTFYMDFPVETSP LTRQHRRDPRLAERWDLVAFGAELGTAYSELVDPVEQRARLTQQSILAAAGDPEAMEVDEGFLSALEFAMPPTGGLGIGV DRVVMMLVGASIRDTLTFPFIRPTGRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 7e-180 | 50 |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-180 | 50 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-180 | 50 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-180 | 50 |
