Gene Information

Name : Vpar_0683 (Vpar_0683)
Accession : YP_003311646.1
Strain : Veillonella parvula DSM 2008
Genome accession: NC_013520
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1004
EC number : -
Position : 820456 - 821622 bp
Length : 1167 bp
Strand : +
Note : TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: amc:MADE_00992 nucleotide sugar dehydrogenase

DNA sequence :
ATGAAAATTGCAATTGCTGGTACAGGCTATGTAGGCCTTTCCAATGGTGTGTTGTTAGCTCAACACAATGAAGTGGTGGC
CCTCGATATCATCCCAGAAAAAGTAGATATGTTAAATCGCAAAGAGACACCTATTGTAGATGCTGAATTGCAAGAGTATT
TAGCTACTAAGGAGTTAAACTTCAAAGCTACACTTGACCCAGTAGAAGCTTTTAACAGTGCAGATTATGTTATCATTTCG
ACACCTACAAATTATGATCCTCAAAAAAACTTTTTCGATACATCTTCTGTTGAACAAGTCATTAAAACTGTGCTAGAGAT
TAATCCTGATGCAGTAATGATTATTAAATCAACTGTACCGGTAGGCTATACGGTACAAATGCGTAAAGAATTTAATACGG
AGAATTTAATTTTTTCGCCAGAATTCTTGCGGGAAGGTAAAGCCTTATACGATAATTTATATCCATCCCGTATTGTTGTG
GGCGAGGATTCTGACAGAGCACGTCGTTTTGGACAATTATTAGCGGAAGGTGCTATTAAAGAAAATATTCCACAATTATA
TACTGATTCTACGGAAGCGGAAGCAATTAAATTGTTTGCTAATACGTATTTAGCATTACGTGTAGCGTATTTCAATGAGT
TAGACTCCTATGCTGAAGTACGTGGCCTTAGCACAAGTCAAATCATCAAAGGGGTTTGTTTAGATCCTCGTATTGGAGAT
TTTTATAATAATCCTTCCTTTGGTTATGGTGGTTATTGCTTGCCAAAAGATACAAAGCAATTATTAGCTAACTATAATGA
TGTACCACAAAACTTAATTTCTGCCATTGTTGATGCGAATAGAACACGTAAAGATCATGTGGCAGATACTATTATTGCTA
AAAATCCGAAAATTGTTGGTATCTATCGCTTGACCATGAAGATGAACTCTGATAATTTTAGAGCATCAGCCATTCAAGGT
GTTATGAAACGTATTAAGGCGAAAGGGATTGCTGTGGTAGTATATGAACCTACACTAGATGCAGAAGATTTCTTTAATTC
GCCAGTTATACGTAATTTTGAAGATTTTAAGCGTGTTAGTGATGTCATTGTAGCTAATCGCTGGGATAGTAGCTTAGAAG
GTGTAAAAGATAAAGTTTATACACGAGATATTTTTGATAGAGATTAA

Protein sequence :
MKIAIAGTGYVGLSNGVLLAQHNEVVALDIIPEKVDMLNRKETPIVDAELQEYLATKELNFKATLDPVEAFNSADYVIIS
TPTNYDPQKNFFDTSSVEQVIKTVLEINPDAVMIIKSTVPVGYTVQMRKEFNTENLIFSPEFLREGKALYDNLYPSRIVV
GEDSDRARRFGQLLAEGAIKENIPQLYTDSTEAEAIKLFANTYLALRVAYFNELDSYAEVRGLSTSQIIKGVCLDPRIGD
FYNNPSFGYGGYCLPKDTKQLLANYNDVPQNLISAIVDANRTRKDHVADTIIAKNPKIVGIYRLTMKMNSDNFRASAIQG
VMKRIKAKGIAVVVYEPTLDAEDFFNSPVIRNFEDFKRVSDVIVANRWDSSLEGVKDKVYTRDIFDRD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0068 YP_300158.1 UDP-glucose 6-dehydrogenase Not tested SCC15305cap Protein 3e-90 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Vpar_0683 YP_003311646.1 nucleotide sugar dehydrogenase VFG0963 Protein 3e-103 56