|
Name : Smon_0664 (Smon_0664) Accession : YP_003306015.1 Strain : Streptobacillus moniliformis DSM 12112 Genome accession: NC_013515 Putative virulence/resistance : Unknown Product : RNA-directed DNA polymerase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3344 EC number : 2.7.7.49 Position : 752370 - 754187 bp Length : 1818 bp Strand : - Note : PFAM: RNA-directed DNA polymerase (Reverse transcriptase); intron maturase type II; KEGG: bpt:Bpet4285 mobile mitochondrial group II intron of COX1 which IS involved in pre-mRNA splicing and in deletion of introns from mitochondrial DNA DNA sequence : ATGAGAAATCCCAACAATGTATTGATTAGTTTGAGAAAACATTCAAAAGAAGAAAACTACACTTACGAAAAATTGTATCG TAACCTTTACAATATAGACCTGTTTTTACAAGCATACCAAAATATTTATGCTAACACAGGGAATATGACTAAAGGTGTAG ATAATCAAACAATAAGTGCAATGAGTCTAGAAAGAATTAACAAAATCATTGATTCACTAAAAGATGAAAGTTACTCGCCC ACACCAACAAAAAGAGTGTATATTCCAAAGAAAAATGGAAAATTAAGACCATTAGGCATACCAAGTATTGATGATAAATT AGTGCAGGAAGTATGTAGAATGTTATTAAATTCTATCTATGATGAAAGCTTTGAGGACATATCTCATGGCTTTAAAGATA ATAGAAGTTGTCATACCGCTTTAAGACAAATTCAAAATAGATTTGTAAGATGTAAATGGTTCGTTGAAGGAGACATTAAA GATTTCTTTGACAATATAAACCATAACATTATGATAGACATTCTATCCAAGCGTATTGACGATAAAAGATTTCTAAGATT AATAAGAAAGTTTCTTAGAGCCGGATACATGGAACAAAACGAATATCTCAACACTTACAGTGGAATGCCACAAGGGTCAA TAATAAGTCCCATACTTTCAAATATTTACTTAGATAAGTTTGACAAGTATATGCAAAGTTACAAGGAAAGCTTTGATAAA GGTACAAAAAGAAAGCAAAACAAGGAATATAAAGCTCTTTATGATAGAAGAAAAAGGCTTGAAAACAAGTTAAGAAAGAC AACCAATAAGATTGAAATAGATAATATTAAATCAGAAATTGAAGAAATTAACAAAAGGTATTCAAATATACCTTGCTTAA ATCCTATGGATAAAAACTTCAAGAGAATACAATATGTTAGATATGCTGATGATTTCATTATCGGCATTATCGGTTCTAAG GCAGATGCTGAAAAGGTAAAACAAGACATTAGTCAATTTATTAAATCAGAATTAAACCTTGAATTATCTGATGAAAAAAC GCTAGTAACAAAATCAACAAATAGAGCAAAATTCTTAGGTTTTGATATTAGAGTAACACCTAGAAGTAATCATACAAAGA GGACAAAAGTAGGTATAAAAGCAAGAAATTTTGGTGGTCATGTAAGACTTGAATTATCAACTTCAACAATACAAAATAAA CTAACAGAACTTGGAGCATTAAAAATTAAAAATCTAAACGGAAAAGAAGTATGGTTTCCTAAAGAAAGAAGCAATCTAAC TTCAAGAACAGACTTAAGTATATTAGAACAATATAACGGAGAAATTAGAGGATTCTGTAACTACTACAGACTCGCAAATA ATTCTTCAAAGCTCCATAAATTTAGATATATTATGGAATACAGTCTGTATAAAACATTAGCTTGCAAATATAGAACGAAA GTAACGGATATCATTACTAGGTACCACATTGGCAAAGATTTTGGTATAAGTTACACAGATAAAAATGGTAACAACAAAAT TCGTTTTCTTTGGAAAGACAGCTTGGCTAGAAAAGAAATTCCCCAAGATGATAATGCTGATGTGATTCATAAGCAAAAAT TCTATCTTAAGAAACCAACGCTAGGTTTAAGATTAAAAAATAATAAGTGTGAATGGTGCGGGAAAGAAACTAATAATCTA AAAGTGTATCAAGTAAAAAAGCTTAAAGACTTAACTGATGAATATGCTTGGCATGTTTTTATGAAAAGCATTAATAGAAA AACGCTAGTAATTTGTAATGAATGTTTTGAAAAAATTAATAACTCAAATGAAGAATAA Protein sequence : MRNPNNVLISLRKHSKEENYTYEKLYRNLYNIDLFLQAYQNIYANTGNMTKGVDNQTISAMSLERINKIIDSLKDESYSP TPTKRVYIPKKNGKLRPLGIPSIDDKLVQEVCRMLLNSIYDESFEDISHGFKDNRSCHTALRQIQNRFVRCKWFVEGDIK DFFDNINHNIMIDILSKRIDDKRFLRLIRKFLRAGYMEQNEYLNTYSGMPQGSIISPILSNIYLDKFDKYMQSYKESFDK GTKRKQNKEYKALYDRRKRLENKLRKTTNKIEIDNIKSEIEEINKRYSNIPCLNPMDKNFKRIQYVRYADDFIIGIIGSK ADAEKVKQDISQFIKSELNLELSDEKTLVTKSTNRAKFLGFDIRVTPRSNHTKRTKVGIKARNFGGHVRLELSTSTIQNK LTELGALKIKNLNGKEVWFPKERSNLTSRTDLSILEQYNGEIRGFCNYYRLANNSSKLHKFRYIMEYSLYKTLACKYRTK VTDIITRYHIGKDFGISYTDKNGNNKIRFLWKDSLARKEIPQDDNADVIHKQKFYLKKPTLGLRLKNNKCEWCGKETNNL KVYQVKKLKDLTDEYAWHVFMKSINRKTLVICNECFEKINNSNEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EFAU085_00689 | YP_008394213.1 | HNH endonuclease domain protein | Not tested | Not named | Protein | 4e-112 | 45 |
