Gene Information

Name : Sdel_0788 (Sdel_0788)
Accession : YP_003303854.1
Strain : Sulfurospirillum deleyianum DSM 6946
Genome accession: NC_013512
Putative virulence/resistance : Unknown
Product : integrase catalytic protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 782935 - 783783 bp
Length : 849 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: lpc:LPC_1389 transposase for insertion sequence element IS5376

DNA sequence :
GTGTTAAAAAAAGGTGAAATTAAAATGATAAAGAAGTTTTTAGCTGAGGGATTGAGTAAAAGTGCCATTGCACGAAAGCT
AGGTATATCAAGAGATACTGTAAGGCGTTATGCCAATCTTCCTGATGATTATGTTCCTCATATCAATCGACCTCCCGTGA
TTAATAGTGTTGATCCCTATTTACCCCATATTGCAAAGATGCTAGAGATGTCAGAGCAAACGAAAAGTGAAATCCCATTA
ACCGTGATTTATGAAGAGATTAAGAAGCTAGGCTATGATGGAAGTTTGCGTTGGTTACAACAAGTGATCCAAAGATATGA
GTTAAGAAGTCGAGCCAAATCAGATGAACCTATTATTCGCTTTGAAACCAAACCATCCCAACAGATGCAAGTCGATTGGA
TTGAGTTTCCTAAAGATAATCTCTCTGCATTTGTGGCAACAATGGGATATTCTAGAGCTTCGTATGTTGAGTATGTTAAT
AATGAGAAGATTGAGACACTCATTGGATGCCATATGAACGCTTTTAACTACTTTGGAGGTGTTCCAATGGAATGTTTGTA
TGACAATATGCGAACCGTCATTTTAGGACGTAATAGCTATGGTAGAGGCAAACATAAACTCAATCCACTCTTTGAAGACT
TTGCCAAACATTGTCGTTTTAGCATTAAAGTCTGCAAACCATATCGTGCTAAGACCAAAGGAAAAGTGGAGAGATTTAAC
CACTATCTGCGGTATAACTTTCATAATGGATTGCGTGTGCGACTCTCTATGAAGCATTACACATTAACACTGGAAAATGC
CAATGCAGAAGTGTTGAAATGGCTCGATACAACAACAAAAGCTCTTTGA

Protein sequence :
MLKKGEIKMIKKFLAEGLSKSAIARKLGISRDTVRRYANLPDDYVPHINRPPVINSVDPYLPHIAKMLEMSEQTKSEIPL
TVIYEEIKKLGYDGSLRWLQQVIQRYELRSRAKSDEPIIRFETKPSQQMQVDWIEFPKDNLSAFVATMGYSRASYVEYVN
NEKIETLIGCHMNAFNYFGGVPMECLYDNMRTVILGRNSYGRGKHKLNPLFEDFAKHCRFSIKVCKPYRAKTKGKVERFN
HYLRYNFHNGLRVRLSMKHYTLTLENANAEVLKWLDTTTKAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec56 AAW51739.1 Aec56 Not tested AGI-3 Protein 6e-34 43
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 1e-47 42
unnamed CAA21403.1 - Not tested HPI Protein 2e-47 42
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 3e-47 42
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 1e-47 42
api83 CAF28557.1 transposase Not tested YAPI Protein 1e-47 42
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 1e-47 42
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 2e-47 42
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 1e-47 42
y2411 NP_669718.1 transposase Not tested HPI Protein 2e-47 42
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 1e-47 42
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 2e-47 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sdel_0788 YP_003303854.1 integrase catalytic protein VFG1607 Protein 7e-48 42
Sdel_0788 YP_003303854.1 integrase catalytic protein VFG1461 Protein 2e-47 42
Sdel_0788 YP_003303854.1 integrase catalytic protein VFG1514 Protein 7e-48 42
Sdel_0788 YP_003303854.1 integrase catalytic protein VFG1626 Protein 7e-48 42