Gene Information

Name : Sdel_1573 (Sdel_1573)
Accession : YP_003304624.1
Strain : Sulfurospirillum deleyianum DSM 6946
Genome accession: NC_013512
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1132
EC number : -
Position : 1587568 - 1589340 bp
Length : 1773 bp
Strand : -
Note : PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: wsu:WS1264 ABC transporter ATP-binding protein

DNA sequence : 
ATGCAAGAAGAAAAAAGGGGCTTATGGGCAATAATGGCTCCTGTGAAAAAAGAGATACAAATGGCCATTCTCCTCTCTGT
TTTAGGAGGAACACTTCTTGTGGTAGATATGGCGCTTTTGGCGTATGTGATGCACATACCTTTGCGTGAGAGTGTGGTGT
TTTTGGGTTTACATGTAAGCTTCCTAGGAGCCTTTGCTCTCTTAGGAATTATTGCCATAGGCTCCTTTTGGTTTTCTAAA
TACGCTTTTTTGGTTTCGCATCATGGCGCCTTTAAGCTTGAAGAGATTTTACGCAAAAGGCTGATTGAGCATTTGGCACA
CATTCCTCTAGGGCATATTATTAGTACGGGTTCGGGAGCACTTAAAAAAGTACTCTTAGATGATGTCAAAAACCTGCATG
CCTTTGTGGCGGATAGCACTCCGATGATTGGGAAAAGCATCGCTACACCAATGGCTTCTTTGATTGCGCTGGTGTGGATT
GACTGGCGTTTGGCGTTGGCAAGTAGTGTTGTTTTAGTCTTAGGTGGGGTCATTATGGGTGTTGTCATGCAAGACTCGGT
AGAACATCGTAAAAATTATGATGCTTCGCAAGAGCAGATCAATCGTGCCGTCATTGAGTTTGTGCAAGCCATGGGTGTGG
TGCGGACGTTTGATGATGGAAGCAGTTCGTTTAAACGTTACGCCGAGGCGCTTTTGAGTTACAAAGAGTGCCTTAAAGCG
TGGATCAATGAGACGGCGGTGAGCGCAAAAATCGGTATGATGATCTTAAGTCCGATGCCGACCCTGCTTGTGGTTGGTGG
CGTGGGAAGCTATTTTATTGCCCATCAGTCGCTCTCTTTTGCGCCGTTTATTGCAGCACTTCTCATCAGCACGGGGATGG
CGGATGCCATGATGCCGCTGATGTGGATGAGCAATTTTATTAAAAAATCGCAAGCCTCCGCCAACCGCATTCAAGAGATT
ATGGCGATTACGTCTCTGTCTTATCCTGCACAAACGCTTATCCCCAATGATGCAAGTGTGGTATTTGAAAATGTCAGTTT
TGCTTATGAGGGGCATACACAGGTCTTGCATAACGTCAGTTTTCAAGCTCCCTCAGGCAGTGTGACCGCTCTCATTGGAC
CCTCAGGGGCTGGGAAAAGTACGGTGGCTAAACTGATTCCTCGTTTTTGGGATGTGAATGAGGGACGCATTTTAGTGGGT
GGTGTTGATGTGCGAAGCATCGACGCTTGGGTCTTAATGGAGCATATCTCTTTTGTCTTTCAAGATACGTTTTTATTTTA
TGACACCCTAAAAGCCAATATTAAAATGGCAAATCCCAATGCCAGTGATGATGCGGTGATAGAAGCAGCGAAAGCGGCGC
AAATTCATGATTTTATTATGAGTTTACCACAGGGATATGAGACCTTAGCAGGCGATAGAGGGACAAGGTTATCGGGTGGG
CAAAAGCAACGCCTGACCATTGCACGTGCCATTTTACGCAACGCACCTATTGTTATTTTGGATGAAGCAACTGCCTTTGC
TGATCCTGAAAATGAAGAGGAGATCGTCAAAGCACTTGCCAATCTGACCAAAGATAAGACGGTGATTATCATCGCACATC
GTCTCAGCACGATTAAAGATGTCGATCAGATTATTGTGTTTGATAAAGGGCGCATTAAAGAGTGCGGAAAACACGAAACA
CTTTTAGCCCAAAAAGGACTTTATGCAATGCTTTGGGAGAACTACGAACAAGCGCAACATTGGGATTTGCGTACGACAAG
GGAGAGTGCATGA

Protein sequence : 
MQEEKRGLWAIMAPVKKEIQMAILLSVLGGTLLVVDMALLAYVMHIPLRESVVFLGLHVSFLGAFALLGIIAIGSFWFSK
YAFLVSHHGAFKLEEILRKRLIEHLAHIPLGHIISTGSGALKKVLLDDVKNLHAFVADSTPMIGKSIATPMASLIALVWI
DWRLALASSVVLVLGGVIMGVVMQDSVEHRKNYDASQEQINRAVIEFVQAMGVVRTFDDGSSSFKRYAEALLSYKECLKA
WINETAVSAKIGMMILSPMPTLLVVGGVGSYFIAHQSLSFAPFIAALLISTGMADAMMPLMWMSNFIKKSQASANRIQEI
MAITSLSYPAQTLIPNDASVVFENVSFAYEGHTQVLHNVSFQAPSGSVTALIGPSGAGKSTVAKLIPRFWDVNEGRILVG
GVDVRSIDAWVLMEHISFVFQDTFLFYDTLKANIKMANPNASDDAVIEAAKAAQIHDFIMSLPQGYETLAGDRGTRLSGG
QKQRLTIARAILRNAPIVILDEATAFADPENEEEIVKALANLTKDKTVIIIAHRLSTIKDVDQIIVFDKGRIKECGKHET
LLAQKGLYAMLWENYEQAQHWDLRTTRESA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ybtP YP_853073.1 inner membrane ABC-transporter Not tested PAI IV APEC-O1 Protein 1e-105 50
ybtP NP_669704.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 9e-106 50
ybtP NP_993009.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 9e-106 50
irp6 YP_002346904.1 lipoprotein inner membrane ABC transporter Not tested HPI Protein 9e-106 50
ybtP CAA21388.1 - Virulence HPI Protein 9e-106 50
irp6 YP_001006813.1 lipoprotein inner membrane ABC-transporter Not tested HPI Protein 4e-106 50
irp6 CAB46573.1 lipoprotein inner membrane ABC-transporter, Irp6 Virulence HPI Protein 3e-106 50
ybtP YP_070126.1 lipoprotein inner membrane ABC-transporter Virulence HPI Protein 3e-105 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sdel_1573 YP_003304624.1 ABC transporter BAC0432 Protein 4e-106 50