Gene Information

Name : Sdel_1572 (Sdel_1572)
Accession : YP_003304623.1
Strain : Sulfurospirillum deleyianum DSM 6946
Genome accession: NC_013512
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1132
EC number : -
Position : 1585796 - 1587571 bp
Length : 1776 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: wsu:WS1265 ABC transporter ATP- binding/permease

DNA sequence :
ATGAGCCAGAATGAACATTCTTACGCACCGTTACGAAAGGTTTTTGCCCTCTCTGTGGAATTGGCAGGGGAATATGCGAG
TGGGTACAAACGCAGTTTAGCGCTTTTTACAGGAGCATTCATCGCACAAGGGATTGCTTTTTGCCTCTTTTACCCCCTAC
TAAAAGCGGTATTTGCGCCGACATTTATCCTTGGCGATGTGCTTTTTTGGTTTGCTTGGATGGCTTTTTTTAGCCTACTC
TTTTGTGTTTTAAAGTGGAAGGGGCATGATTTTGACTATTCGGGCTACATCGCAGAAGTCACACACGATTTGCGTACGAA
GCTAGGAAGTGCGCTTCGAAATATGCCTCAAGAAGAGCTGAGTCGGTATAAAACAGGTGAATTAAACGCCATTTTTTCGA
GCAATGTCGATGAGTCGGTCATTCATATGGGCGTGGTTGCTTCTTTGTTTTTGCAAATTACTGTTGTGCCACTGGTGGTC
TTGGTGGTGAGTTTTTTTATTGAGTGGCGACTTGCTTTGGTGATGCTCTGCTTTATCCCAATGGTGCTACCACTTTATGT
GTGGAAGCGCCGTGCAAGCATTGCTGAAAAAAGTGAGTTTAACGAAGCCAATGCACAACTAGAAGCAGGCTTTATCGAGT
ACGTTCAAGGACTTCCTATTCTTCGCGCACTCAATCAAACAGGCAAAAATGCTCAAAATCTAAGACAGGCAATCTTACAT
GTAAAGCGTGTTCAAGCCCAAGGTATTGAGGCTTCAACCCTGCCACTGCTTTTTATGGGTGTTTTAATTGAGGTGACCCT
TTTAGTGCTTTTAGGTGTGGGGAGCTACTTGGTTGATGAGAACCTTTTAGCCCTTCCCACCTTAGCGGCAATGCTCGTTA
TCGTGTCACGTTTAAGTGAACCTTTGTCGCTTTTTTTAGGGGTCATTCCGATGTTTGATTTGATGGACAGTGCCTTTTTA
CACATCAAATCCATTTTAAAGACCAAACCTTTAGAACGCAAAGAACCACATGAAATACCTCAATCCTTTGATGTGGATGT
TGCCACGGTTGATTTTAGCTATTGTGGTGAGCGTGATAAAGCTCTTCATAGTGTCAGTTTAAGCTTTAAAGAGCGTACGC
TAAGTGCCATTGTGGGAACCTCAGGTTCTGGTAAAACGACACTGATAAAGCTTTTGATGCGTTATGCTGACCCTCAAAAA
GGGGTGATCCGTATAGGGGGAGCGGATATTCGTTCGATGGAAAATGATGTGTTAATGAAGCATTTTTCCGTAGTGTTTCA
AGACGTGTATCTCTTTGATGACACCATTTTAAACAACATTCGCATGGGACGAGCCGATGCGAGTGATGAAGCGGTAGAAG
AGGCGGCCAGAGCGGCGTTTTGCCATGAGTTTATCGCACGCTTACCGCAGGGGTATCAGACTCGCATCGGTGACATCGGC
GGAAGCCTAAGTGGTGGGGAGAGGCAACGCATCAGCATTGCACGGGCGATTTTGAAAAATGCGCCGATTGTCATTTTAGA
TGAGCCGACCGCAGCTCTTGATACGCAGAGTGAAGTGGCGGTGCAAAAGGCGATTGATACGCTGGTGCGTGATAAAACGG
TTATTGTCATTGCTCATCGTCTCTCTACCATTAGCGGTGCGGATAGCATTTTTGTGTTTCATGAAGGGCATTTGGTAGAA
GAGGGAACGCATGAAAGCTTAGTGGCTAAAAAAGGTAAATACCATGCGATGTGGAGTGCGCAACAACGCATTAAAGCGTG
GAATGTTGCCGTATGA

Protein sequence :
MSQNEHSYAPLRKVFALSVELAGEYASGYKRSLALFTGAFIAQGIAFCLFYPLLKAVFAPTFILGDVLFWFAWMAFFSLL
FCVLKWKGHDFDYSGYIAEVTHDLRTKLGSALRNMPQEELSRYKTGELNAIFSSNVDESVIHMGVVASLFLQITVVPLVV
LVVSFFIEWRLALVMLCFIPMVLPLYVWKRRASIAEKSEFNEANAQLEAGFIEYVQGLPILRALNQTGKNAQNLRQAILH
VKRVQAQGIEASTLPLLFMGVLIEVTLLVLLGVGSYLVDENLLALPTLAAMLVIVSRLSEPLSLFLGVIPMFDLMDSAFL
HIKSILKTKPLERKEPHEIPQSFDVDVATVDFSYCGERDKALHSVSLSFKERTLSAIVGTSGSGKTTLIKLLMRYADPQK
GVIRIGGADIRSMENDVLMKHFSVVFQDVYLFDDTILNNIRMGRADASDEAVEEAARAAFCHEFIARLPQGYQTRIGDIG
GSLSGGERQRISIARAILKNAPIVILDEPTAALDTQSEVAVQKAIDTLVRDKTVIVIAHRLSTISGADSIFVFHEGHLVE
EGTHESLVAKKGKYHAMWSAQQRIKAWNVAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
irp7 CAB46572.1 inner membrane ABC-transporter, Irp7 Virulence HPI Protein 1e-98 44
irp7 YP_001006812.1 inner membrane ABC-transporter YbtQ Not tested HPI Protein 2e-98 44
irp7 YP_002346905.1 ABC transporter permease Not tested HPI Protein 1e-100 44
ybtQ NP_669703.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 1e-100 44
ybtQ NP_993010.1 ABC transporter permease Virulence HPI Protein 1e-100 44
ybtQ YP_070127.1 ABC transporter permease Virulence HPI Protein 1e-100 44
ybtQ CAA21387.1 - Virulence HPI Protein 1e-100 44
APECO1_1055 YP_853072.1 ABC transporter Not tested PAI IV APEC-O1 Protein 8e-101 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sdel_1572 YP_003304623.1 ABC transporter BAC0433 Protein 6e-101 44