Gene Information

Name : Sdel_1122 (Sdel_1122)
Accession : YP_003304180.1
Strain : Sulfurospirillum deleyianum DSM 6946
Genome accession: NC_013512
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1140143 - 1140859 bp
Length : 717 bp
Strand : -
Note : TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: cju:C8J_0767 flagellar biosynthesis protein FliP

DNA sequence : 
TTGCTTTTGCTCTCCCTTACTCCTATGGCGTTTGGTGCTGACACCATTCCGACCGTCAATCTCTCTTTGAGTGCGCCAGA
CTCTCCGCAACAGCTTGTGACCAGTATGAATTTGGTATTGGTTTTAACCATTTTGGTTTTAGCCCCTTCACTCATTTTCA
TGATGACCAGTTTTTTACGTCTCTTGATTGTCTTCTCATTTTTGCGTCAAGCCTTAGGAACACAGCAGATGCCACCTTCA
CAAGTGATGGTTTCTTTGGCGATGATTTTGACCTTTTTTATCATGGAACCTGTCATGAAAGAGTCCTATGATGTGGCAAT
TAAGCCTTATTTAGCAGAGAAAATGAGCTATCAAGAGGCTTTTGAGAAAGGCTCAGCGCCTTTTAAAGCCTTTATGATTC
GAAATACCCGTGAGAAAGATTTGGCACTCTTCTTTCGTATTCGTAACCTTGAAAACCCTAAAAATATTGAAGATGTGCCC
TTAACCGTCGCGATGCCCGCCTTTATGATTAGTGAGTTAAAAACAGCCTTTGAGATAGGCTTTTTGCTCTACTTGCCTTT
TTTGGTTATCGATATGGTGGTGAGTTCTGTGTTGATGGCAATGGGTATGATGATGCTTCCCCCTGCGATGATTTCGCTAC
CTTTTAAGCTGCTTATCTTTGTACTCGTGGATGGGTGGAATTTACTGGTACAACGCTTGGTGGAGAGTTTTCACTAA

Protein sequence : 
MLLLSLTPMAFGADTIPTVNLSLSAPDSPQQLVTSMNLVLVLTILVLAPSLIFMMTSFLRLLIVFSFLRQALGTQQMPPS
QVMVSLAMILTFFIMEPVMKESYDVAIKPYLAEKMSYQEAFEKGSAPFKAFMIRNTREKDLALFFRIRNLENPKNIEDVP
LTVAMPAFMISELKTAFEIGFLLYLPFLVIDMVVSSVLMAMGMMMLPPAMISLPFKLLIFVLVDGWNLLVQRLVESFH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-27 45
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-28 44
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-28 44
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-28 44
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 7e-28 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 7e-28 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 7e-26 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sdel_1122 YP_003304180.1 flagellar biosynthetic protein FliP VFG2494 Protein 5e-46 53
Sdel_1122 YP_003304180.1 flagellar biosynthetic protein FliP VFG2338 Protein 6e-41 52
Sdel_1122 YP_003304180.1 flagellar biosynthetic protein FliP VFG1259 Protein 7e-44 49
Sdel_1122 YP_003304180.1 flagellar biosynthetic protein FliP VFG2016 Protein 3e-41 45
Sdel_1122 YP_003304180.1 flagellar biosynthetic protein FliP VFG0519 Protein 8e-29 44
Sdel_1122 YP_003304180.1 flagellar biosynthetic protein FliP VFG0394 Protein 2e-28 44
Sdel_1122 YP_003304180.1 flagellar biosynthetic protein FliP VFG0188 Protein 1e-28 44
Sdel_1122 YP_003304180.1 flagellar biosynthetic protein FliP VFG0044 Protein 2e-27 42