|
Name : Sdel_1008 (Sdel_1008) Accession : YP_003304068.1 Strain : Sulfurospirillum deleyianum DSM 6946 Genome accession: NC_013512 Putative virulence/resistance : Unknown Product : integrase catalytic protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4584 EC number : - Position : 1030536 - 1031642 bp Length : 1107 bp Strand : - Note : PFAM: Integrase catalytic region; KEGG: lpc:LPC_1389 transposase for insertion sequence element IS5376 DNA sequence : ATGCTTAAAAAAGGTGATGTAAAAATGATTCATAAGATGCTCAAAGATGGTCTGAGTAAGAGTGCTATTGCACGTAAACT TGACATTAACAGAGATACCGTTGCGAAGTATGCGAAGCTGCCAGAGGGTTATATTCCTGTTATAAAAAGAGAACCTGTAG AGACAACGGTTGATCCGTATCTGCCCAATATAGCAAGAATGCTAGAAGAGGCACACGCATTAGGTATTTCTATCCCCAAT ACATCCATATATGATGAGATTCAGAAACTTGGTTATCGAGGAAGTCTTCGGTGGATGAAAGATATTATGCTTCGTTATGA GCTTCGTCAGAAAGTAAAAAACGAAGAACCACTTGTCAGATTTGAGACAAACAAGGCTCAACAGATGCAAGTGGATTGGG TTGAATTTCCCAAAGATAATTTATCTGCATTTGTTGCAACTATGGGATACTCTAGAGCATCTTATGTGGAATATGTGATG GATGAGAAAGTAGACACTCTCATAAAATGCCACATGAACGCCTTTAGTTATTTTGGTGGTGTGCCACATGAGGCACTCTA TGATAATATGAAGACGGTTATTTCCAAACGCAATGCTTATGGATATGGTAAGCATAAATTCAATGAACAATTCCGCGACT TTGCCCAAAAACATTGTGGTATGGCTTTAAAAGTTTGTAAACCTTATCGTGCACAAACCAAGGGAAAAGTAGAGAGATTT AATCACTATTTCCGATACAGTTTTCACAATATGTTTAAAGTGAGACTTTCCCTGATGGGCTATAAGATGACATTAGAAAA TGCCAATGCGGCAGTCATAGATTGGTTAGATTTTACAGCAAATGCGAGAATACATCAAACAACACTCCACAGACCGTTTG ATCTGTTAGCAGAAGAGCAATTGCAGTTGCTTCCTCTGCCTAAGACTTATCATGGGATACACCCGCTCAAAGCCACCACT AAAAGTGTAACACAAGATAGCCAAACATCCAATAGAATAACTATTCACATTCCCACTCGTGATCTTCAAAGTTACGATCA ATTTATACCTATGTTAGCGTATATAGTTTTACCTGCCTATACGCTAGGAGGTATATTATGGCATTAA Protein sequence : MLKKGDVKMIHKMLKDGLSKSAIARKLDINRDTVAKYAKLPEGYIPVIKREPVETTVDPYLPNIARMLEEAHALGISIPN TSIYDEIQKLGYRGSLRWMKDIMLRYELRQKVKNEEPLVRFETNKAQQMQVDWVEFPKDNLSAFVATMGYSRASYVEYVM DEKVDTLIKCHMNAFSYFGGVPHEALYDNMKTVISKRNAYGYGKHKFNEQFRDFAQKHCGMALKVCKPYRAQTKGKVERF NHYFRYSFHNMFKVRLSLMGYKMTLENANAAVIDWLDFTANARIHQTTLHRPFDLLAEEQLQLLPLPKTYHGIHPLKATT KSVTQDSQTSNRITIHIPTRDLQSYDQFIPMLAYIVLPAYTLGGILWH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| y1093 | YP_002346890.1 | transposase for insertion sequence IS100 | Not tested | HPI | Protein | 9e-47 | 42 |
| y1094 | CAD42088.1 | OrfA protein of IS100 transposase | Not tested | PAI II 536 | Protein | 6e-47 | 42 |
| y2411 | NP_669718.1 | transposase | Not tested | HPI | Protein | 9e-47 | 42 |
| orfA | CAE85182.1 | OrfA protein, transposase, IS100 | Not tested | PAI V 536 | Protein | 6e-47 | 42 |
| YPTB1585 | YP_070113.1 | transposase | Not tested | HPI | Protein | 9e-47 | 42 |
| y1094 | CAC43410.1 | IS100 transposase; transposase ORFA | Not tested | PAI III 536 | Protein | 6e-47 | 42 |
| unnamed | CAA21403.1 | - | Not tested | HPI | Protein | 9e-47 | 42 |
| y1093 | CAD33720.1 | ORF A protein | Not tested | PAI I 536 | Protein | 1e-46 | 42 |
| unnamed | CAB46599.1 | IS100 transposase | Not tested | HPI | Protein | 7e-47 | 42 |
| api83 | CAF28557.1 | transposase | Not tested | YAPI | Protein | 7e-47 | 42 |
| s0035 | CAD33773.1 | ORF A protein | Not tested | PAI I 536 | Protein | 6e-47 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sdel_1008 | YP_003304068.1 | integrase catalytic protein | VFG1626 | Protein | 4e-47 | 42 |
| Sdel_1008 | YP_003304068.1 | integrase catalytic protein | VFG1607 | Protein | 4e-47 | 42 |
| Sdel_1008 | YP_003304068.1 | integrase catalytic protein | VFG1461 | Protein | 7e-47 | 42 |
| Sdel_1008 | YP_003304068.1 | integrase catalytic protein | VFG1514 | Protein | 4e-47 | 42 |
