Gene Information

Name : Sdel_1004 (Sdel_1004)
Accession : YP_003304066.1
Strain : Sulfurospirillum deleyianum DSM 6946
Genome accession: NC_013512
Putative virulence/resistance : Unknown
Product : IstB domain-containing protein ATP-binding protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 1027287 - 1028105 bp
Length : 819 bp
Strand : -
Note : PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gsu:GSU2594 transposase/IS protein

DNA sequence :
ATGGAATTAATCTCATCCATTGAAGAGCTCTGCAAAGAGCTTAATCTCTCCACGATTGGGAGCCAATACCATGATATAGC
AACTTTGGCAGCGAAAGAGAATTGGCAGTATGTTCAGTTCCTTGAGGAGTTGCTACGCAATGAAGCTGATAGCAGATTGG
GGCGTTCTACAAATACCTTAACGAAGCTTGCAGGATTTCCTGCTATTAAAACCCTAGAGCAGTTTGATTATACTTTCTCA
GTGGGTGTGAACCGAAAACAGATTGAAGAGTTATCCAATCTAACATTTGTAAAAAAACATGAAAATATCATCCTCTTAGG
TGAAAGCGGTGTGGGTAAAACCCATCTTGCCATTGCTCTTGGTTATAAAGCTGTACAGCATCGTTACAAGGTTCGATTTA
CGACTATCAGTGAGCTTTTAAGCAGTGCCAATAAAGCCAAAAAAGAGAAGAAATACGATAGCTTCCTCAAATCCATCACA
GGACCATCGGTACTGGTTATTGATGAAATAGGATACTTCAATATGAGTAAAGAGGAAGCCAATCACTTTTTTCAGATTAT
CTCGAAACGCTATGAAAAAAGCTCTACCATCTTTACATCAAACTTAGTATTCAGTAAATGGGTTCAAGTATTTGCAGGGG
ATAAAATAGTCACAACAGCCATATTAGACCGAGTGTTGCATCACTCACATATCATCAATATACAAGGAGACAGCTACAGA
CTTAAAGAAAAAAAACAAACAGGAGTTTTACACTCAGAAATCTATAAGTTTGAAGCTAAATCTTCAAACCAAAGCAGTCA
GAATTCAGAGGTGGTTTAA

Protein sequence :
MELISSIEELCKELNLSTIGSQYHDIATLAAKENWQYVQFLEELLRNEADSRLGRSTNTLTKLAGFPAIKTLEQFDYTFS
VGVNRKQIEELSNLTFVKKHENIILLGESGVGKTHLAIALGYKAVQHRYKVRFTTISELLSSANKAKKEKKYDSFLKSIT
GPSVLVIDEIGYFNMSKEEANHFFQIISKRYEKSSTIFTSNLVFSKWVQVFAGDKIVTTAILDRVLHHSHIINIQGDSYR
LKEKKQTGVLHSEIYKFEAKSSNQSSQNSEVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 3e-62 49
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 3e-62 49
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 4e-62 49
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 3e-62 49
unnamed CAA21402.1 - Not tested HPI Protein 4e-62 49
api84 CAF28558.1 putative transposase Not tested YAPI Protein 3e-62 49
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 3e-62 49
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 3e-62 49
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 4e-62 49
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 4e-62 49
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 3e-62 49
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 2e-61 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sdel_1004 YP_003304066.1 IstB domain-containing protein ATP-binding protein VFG1515 Protein 2e-62 49
Sdel_1004 YP_003304066.1 IstB domain-containing protein ATP-binding protein VFG1627 Protein 2e-62 49
Sdel_1004 YP_003304066.1 IstB domain-containing protein ATP-binding protein VFG1606 Protein 2e-62 49
Sdel_1004 YP_003304066.1 IstB domain-containing protein ATP-binding protein VFG1663 Protein 1e-61 48