Gene Information

Name : ygiX (ETAE_0448)
Accession : YP_003294506.1
Strain : Edwardsiella tarda EIB202
Genome accession: NC_013508
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator in two-component regulatory system with QseC
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 492511 - 493170 bp
Length : 660 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCGTACTGTTAATTGAAGACGATCGCCTGATCGGCGACGGTATTAAAGCCGGATTGAGTAAGATGGGATTTACCTT
GGACTGGTTTACCGACGGGCAGCTAGGCATGACGGCGCTGGAGAGCGCGCCCTATGACGCCGTGATCCTCGACCTGAGCC
TGCCGGGCATCGACGGGCTGGAAATTCTGCGCCGCTGGCGCGAAGCCGGGCACGCGGAGCCGGTTCTGATCCTGACCGCC
CGCGATGCCCTGGAGCAGCGAGTGACCGGGCTACAGCAGGGCGCAGATGACTATCTGTGTAAGCCCTTCGCCCTGATCGA
GGTCGCCGCGCGCCTGCAGGCGCTGATCCGGCGCAACCACGGCCAGGCCCAGACCCTGCTCAGCCACGGCGCGGTGAGCC
TCGATCCCCTGAGCCTCACCGCGACCCTCGACGGTGCATCGCTGCCGCTAAAGCCCAAGGAGTTCGCCCTGCTGGAGCTG
CTGCTGCGCAACGCCGGGCGCGTGCTGCCGCGCTCGCTGATCGAGGAAAAGCTCTACAGCTGGGATGACGATGTCTCCAG
CAACGCCGTCGAGGTCCACATCCACCACCTGCGCCGCAAGCTGGGCAGCCACTTTATCCGCACCGTGCACGGCGTCGGCT
ACACGCTGGGAGACTCCTGA

Protein sequence : 
MRVLLIEDDRLIGDGIKAGLSKMGFTLDWFTDGQLGMTALESAPYDAVILDLSLPGIDGLEILRRWREAGHAEPVLILTA
RDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNHGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLEL
LLRNAGRVLPRSLIEEKLYSWDDDVSSNAVEVHIHHLRRKLGSHFIRTVHGVGYTLGDS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-41 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_003294506.1 DNA-binding response regulator in two-component regulatory system with QseC BAC0487 Protein 3e-41 47
ygiX YP_003294506.1 DNA-binding response regulator in two-component regulatory system with QseC BAC0083 Protein 1e-35 44
ygiX YP_003294506.1 DNA-binding response regulator in two-component regulatory system with QseC BAC0638 Protein 2e-29 43
ygiX YP_003294506.1 DNA-binding response regulator in two-component regulatory system with QseC BAC0197 Protein 3e-36 42
ygiX YP_003294506.1 DNA-binding response regulator in two-component regulatory system with QseC BAC0308 Protein 2e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_003294506.1 DNA-binding response regulator in two-component regulatory system with QseC VFG0473 Protein 1e-39 45
ygiX YP_003294506.1 DNA-binding response regulator in two-component regulatory system with QseC VFG1390 Protein 4e-33 41