Gene Information

Name : basR (ETAE_0394)
Accession : YP_003294452.1
Strain : Edwardsiella tarda EIB202
Genome accession: NC_013508
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator in two-component regulatory system with BasS
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 436997 - 437659 bp
Length : 663 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAATTCTGATCGTGGAAGACGATACCCTGATCCAGCAGGGACTGGCCCAGGCGATGGCGCGGGAGAACTACGCCTG
TGACTGTGCGGGCAACGCGGCGAGCGCCAGCGCGCTGCTGCAGAGCGGTCACTACAGCCTGATCATCCTCGATCTGGGGC
TGCCCGGTATGGACGGTGCCAGCGCGCTGCGTCAGTGGCGACGCGAGGGCATCGACGCGCCGGTGCTGATCCTGACCGCC
CGGGATACCGTCAGCGATCGGGTCGGCGGGCTGGACGCCGGCGCCGATGACTATCTGGTAAAACCCTTCGCGCTGGCCGA
GCTGCTGGCGCGCGTCCGTGCCCTGATCCGTCGCATGCAGGGACTGTGCAACAACGCTCTGCAGGTCGACGATATCCATC
TGGATCTCTCCAGCCAGCAGGTCAGCTGCGGCGGCCTGCCGCTGGAGATCACCCCCAAAGAGTTCGCTATCCTGACGCGC
CTGATGATGCGCGCCGGGCAGACCATCAGCCGCGAAGTTCTCCAGCAGGATCTCTACTCCTGGCAGGATGAGCTCAGCTC
CAACTCGCTGGAGGTACATATCCATAACCTGCGGCGCAAGCTGGGGAAAAACCGGATCAAAACCCTGCGCGGCGTCGGCT
ATCGGCTGGAGAAAACGCCGTGA

Protein sequence : 
MKILIVEDDTLIQQGLAQAMARENYACDCAGNAASASALLQSGHYSLIILDLGLPGMDGASALRQWRREGIDAPVLILTA
RDTVSDRVGGLDAGADDYLVKPFALAELLARVRALIRRMQGLCNNALQVDDIHLDLSSQQVSCGGLPLEITPKEFAILTR
LMMRAGQTISREVLQQDLYSWQDELSSNSLEVHIHNLRRKLGKNRIKTLRGVGYRLEKTP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-25 43
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-29 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
basR YP_003294452.1 DNA-binding response regulator in two-component regulatory system with BasS BAC0487 Protein 6e-55 65
basR YP_003294452.1 DNA-binding response regulator in two-component regulatory system with BasS BAC0083 Protein 2e-26 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
basR YP_003294452.1 DNA-binding response regulator in two-component regulatory system with BasS VFG0473 Protein 1e-47 57
basR YP_003294452.1 DNA-binding response regulator in two-component regulatory system with BasS VFG0596 Protein 5e-26 43