Gene Information

Name : intC (ETAE_2465)
Accession : YP_003296511.1
Strain : Edwardsiella tarda EIB202
Genome accession: NC_013508
Putative virulence/resistance : Unknown
Product : prophage Sf6-like integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2594426 - 2595583 bp
Length : 1158 bp
Strand : +
Note : -

DNA sequence :
ATGCTCACGGTTAAACAGATTGAAGCAGCAAAGCCAAAAGACAAGCCCTATCGCCTACTGGATAGCAACGGGCTATACCT
CTACATACCAGCCTCTGGAAAAAAGGTGTGGCAACTGCGTTTCAAACTAGGCGGTAAAGAGAAAATTTTAACCGTGGGTA
AATATCCTCTTGTTTCTTTACAAGAAGCTCGTGACAAAGCCTACCAGGCAAGAAAGGATATTGCCGATGGTATAGATCCA
GTAAGGACCAAAAAGGAAAGCGAGAAGGATAACTCATTCTCCGTGATCTATAAGGAATGGTACGCCCACAAGCGCCAGGT
ATGGTCTGAAGGGTATGCGAATGAATTACAGCGGATGTTTGAAACTGATATTCTCCCGCTCATAGGTGCGATGGAGATGG
ATGAAATCGAGCCTATGGCCCTTTTATCTGTTGTGAGGCGGATTGAAGAGCGCGGAGCCATGGAGAGAGCAAACAAGGCC
CGGCGTCGTTGTGGTGAGGTGTTTCGTTACGCCATAGTAACGGGGAGAGCAAAATACAATCCAGCGCCGGATCTCGCTGA
TGCAATGAAGGGATACAGGAAGAAAAATTTCCCTTTCCTTCCTGCTGAACAGATCCCTGCATTCAACCAGGCATTGGCTG
GATATTCAGGCAGTATAGTTTCGAAGATTGCCACTATGGTGTTGCAGTATACAGCCCTGCGAACCAAAGAGCTCAGATCT
ATGAAATGGCCTAACGTCGATTTCACTTCCGGACTAATTACGATCGACGAATCGGAAATGAAGAGCCGTAAGCCTCACAT
TGTCCCTATGTCGCACCAAGTCGCTGAGTTGCTCAAAGCATTAAAGCCAGTCACTGAACCTGTATCGCAGTTTGTATTTG
CCGGTAGAAATGATAAAAATAAGTCGATCAGTGAAAATGCCGTTCTATTGGTCATTCGCCAAATCGGCTATGAAGGGCTG
GCGAGTGGTCACGGTTTCCGCCACCAATTTAGCACCATTCTACACGAGCACGAATGGCCTTCTGAGGCGATAGAGCGCCA
GCTTGCTCACACAGATAAACAGTCCGTGCGCGGGATCTATAACCATGCACAATATCTGGATAAAAGGCGAGAGATGATGC
AATGGTGGGCTGACTGGATAGACGGCAATGTCGCATGA

Protein sequence :
MLTVKQIEAAKPKDKPYRLLDSNGLYLYIPASGKKVWQLRFKLGGKEKILTVGKYPLVSLQEARDKAYQARKDIADGIDP
VRTKKESEKDNSFSVIYKEWYAHKRQVWSEGYANELQRMFETDILPLIGAMEMDEIEPMALLSVVRRIEERGAMERANKA
RRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPAEQIPAFNQALAGYSGSIVSKIATMVLQYTALRTKELRS
MKWPNVDFTSGLITIDESEMKSRKPHIVPMSHQVAELLKALKPVTEPVSQFVFAGRNDKNKSISENAVLLVIRQIGYEGL
ASGHGFRHQFSTILHEHEWPSEAIERQLAHTDKQSVRGIYNHAQYLDKRREMMQWWADWIDGNVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 7e-91 51
ECs4534 NP_312561.1 integrase Not tested LEE Protein 7e-91 51
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-91 51
int ACU09430.1 integrase Not tested LEE Protein 5e-91 51
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-91 51
int AAD44730.1 Int Not tested SHI-2 Protein 5e-90 51
int CAC39282.1 integrase Not tested LPA Protein 2e-91 51
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-90 51
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-90 51
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-90 51
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 6e-88 50
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-86 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intC YP_003296511.1 prophage Sf6-like integrase VFG0783 Protein 3e-91 51
intC YP_003296511.1 prophage Sf6-like integrase VFG0598 Protein 7e-91 51