Gene Information

Name : atoC (ETAE_2011)
Accession : YP_003296059.1
Strain : Edwardsiella tarda EIB202
Genome accession: NC_013508
Putative virulence/resistance : Virulence
Product : acetoacetate metabolism regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2119719 - 2121104 bp
Length : 1386 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAACCCGCAACCGTATTCTCATCGTGGATGACGAAGATAACGTACGCCGCATGCTCACCACCGCGTTGACGCTCCA
GGGGCATGAAACACACGCCGCCAGCCACGGGGCCGAGGCGCTGCAGCGCTTTGCCGACGCGCCGCCGGACGTGGTGCTGA
TGGATATCCGTATGCCGACCATGAACGGGATCGACGCCCTGAAAGTCATGCGCGCCCGGCAGCCGCGCACCCCCGTCATT
CTGATGACCGCCTACGCCGAGGTGGAGACCGCCGTCGAGGCGCTGCGCAGCGGCGCATTCGATTATGTGATCAAGCCCTT
CGATCTGGATGAGCTGAACTTACTGATCCAGCGCGCGCTGCAGCTGCAGGCGATGAAGCAGGAGATCCGCAGCCTGCATC
AGGCCCTGAGCACCCGCTGGCAGTGGGGACATATCCTGACCAACAGCCCGCGTATGATGGATATCTGCAAAGACACCGCG
AAAATCGCCCTTTCGCAGGCCAACGTGCTGATCAGCGGGGAGAGCGGAACCGGCAAGGAGCTGATTGCCCGCGCCATTCA
CTACGGCTCGCGGCGCGCAAGCGGCCCCTTTATCAAGGTCAACTGCGCCGCCCTGCCGGAGTCGCTGCTGGAGAGCGAGC
TGTTCGGCCATGAGAAGGGCGCATTCACCGGCGCGCAGACCCAGCGCCAGGGGCTGTTTGAGCGCGCCCATCGGGGCACC
CTGCTGCTGGATGAAATCGGCGAAATGCCGCCGCCGCTGCAGGCCAAGCTGCTGCGGATCCTGCAGGAAAGGGAGTTCGA
GCGCGTAGGTGGACACCAAACCATTCGGGTGGATATCCGCATCGTGGCCGCCACCAACCGGGATTTACAGGCGATGGTGC
GCGAGGGCGGCTTCCGTAACGATCTCTTCTATCGCCTGAACGTCATTCATCTGCCGCTGCCGCCGCTGCGCGAGCGGCGG
CAGGACATCGCCCTGCTCGCCAACCATTTCTTACAAAAGTTCAGCTCGGAGAACCAGCGCGACATGATTGAGATCGATCC
GGCGGCGATGTCGCTGCTCAGCGCCTGGCCCTGGCCGGGCAACATCCGCGAGCTCTCCAACGTCATCGAGCGCGCGGTGG
TAATGAGCACCGGCGCGGTCATTTTTGCCGACGATCTGCCGGCTCCGCTGCACCAGCCCATCGGCGGCGGCGCTGGCGCC
AAAAGCGCCCCGCCCGGCGAGCGCAATCTGAAAGAGGAGATCAAGCGCGAGGAGCGGCGCATCATCAGCGAGGTGCTCGA
ACAGCAGGCGGGAAACCGCACCCGCACCGCCCTGATGCTGGGCATCAGCCGCCGCGCCCTGATGTACAAGCTGCAGGAGT
ACGGCATCGATCCGGCCGGGTGCTAG

Protein sequence : 
MKTRNRILIVDDEDNVRRMLTTALTLQGHETHAASHGAEALQRFADAPPDVVLMDIRMPTMNGIDALKVMRARQPRTPVI
LMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRALQLQAMKQEIRSLHQALSTRWQWGHILTNSPRMMDICKDTA
KIALSQANVLISGESGTGKELIARAIHYGSRRASGPFIKVNCAALPESLLESELFGHEKGAFTGAQTQRQGLFERAHRGT
LLLDEIGEMPPPLQAKLLRILQEREFERVGGHQTIRVDIRIVAATNRDLQAMVREGGFRNDLFYRLNVIHLPLPPLRERR
QDIALLANHFLQKFSSENQRDMIEIDPAAMSLLSAWPWPGNIRELSNVIERAVVMSTGAVIFADDLPAPLHQPIGGGAGA
KSAPPGERNLKEEIKREERRIISEVLEQQAGNRTRTALMLGISRRALMYKLQEYGIDPAGC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 7e-61 44
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 7e-61 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
atoC YP_003296059.1 acetoacetate metabolism regulatory protein BAC0467 Protein 1e-75 47
atoC YP_003296059.1 acetoacetate metabolism regulatory protein BAC0089 Protein 2e-78 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
atoC YP_003296059.1 acetoacetate metabolism regulatory protein VFG1249 Protein 1e-63 46
atoC YP_003296059.1 acetoacetate metabolism regulatory protein VFG0116 Protein 5e-61 44
atoC YP_003296059.1 acetoacetate metabolism regulatory protein VFG1214 Protein 2e-66 42