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Name : clpC (FI9785_349) Accession : YP_003292499.1 Strain : Lactobacillus johnsonii FI9785 Genome accession: NC_013504 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 303302 - 305758 bp Length : 2457 bp Strand : + Note : - DNA sequence : ATGGAAAAATCATATAGTGATAGTGCAAAAAATGTTCTTGAAATTGCTAAAGAGCAAGCACAAAACTTTCACCATCGAAT TATTGGAACAGAGCATGTTCTGCTTGCTTTAGTAATTGAAGCTAATGGGGATGCTGGAAAACTTTTGCGTGAAAGAAATG TAACACCAACCTTAGTGCGAGAAGAAATTGAAAGATATACTGGCTATGGTTCAAGTCCAAAGGCCACATATATGGAAATG TCCCCACGCTTAAGTTTAGTTTTGAATTTTGCTAAACAAAAGGCTGACGAATTAGGGACTGCTCAAATTGAGACAAAACA TATTTTGCTAGGTTTGTTAGCTAGTGATCAAATTTTAGCAAGTTTAATTTTGAAAAATATTGGTGTAGATCCACGAGATT TAAGTCAGGATGTAAATGATAGTTTCATGGATGGTTCTGGGGAAGAAGATAATGTTCTTGGTATTTCTTCAGCCACTGGC ATGAAAAAAGGTAAGTCATTGACTCCAAATTTAGATAAAGTTAGTGTGAATCTAAATAAAAGAGCCCGTGAAGGGGCAAT TGACCCGGTAATTGGTAGAGATAAAGAAATAAAAAGAGTAATTCAAATCTTATCTCGAAGAACCAAAAACAATCCCGTTT TGGTAGGAGAACCTGGTGTTGGTAAGACTGCAGTTGCACAAGGAATAGCAGCCGCAATTGTAAATCATGAAGTTCCAGAT ACTCTAGCTAAAAAACGAGTTATGGCCTTGGACATGGGTAGTTTAATTGCTGGAACTAAATATCGTGGTGAATTTGAAGA TAGAATGAAGAAGATTCTAAAAGAAATTCAACAGGATGGTTCAGTTATCTTATTTGTTGATGAAATGCATACTTTGATTG GTGCAGGTGGCGCGGAAGGTGCAATTGATGCTTCAAATATCTTAAAGCCTTCATTAGCACGTGGCGATATTCAAATGATT GGTGCTACTACTTTTGATGAGTACCAAAAATATATTGAAAAAGATCAAGCTTTAGCAAGACGTTTTCAACAAGTAAAAAT TGGTGAACCTTCAAAAGAAGAAACTGTGGATATTTTAAAAGGCTTGCGCCCTAAATATGAAAAATTCCACAATGTAAAAA TTGAAGATGAGGCAATTAATGATGCAGTTGAATTTTCAACACGTTATATTGCTAACCGATTCTTACCTGATAAAGCAATT GATTTGATTGATGAAGCAAGTGCAGCTGTAAAAATTCAAGCAATCGGTAAAAGTGATCCTCGTCTAACTAAATTGGATAC ACAAATTAATGATGTTATTCATCAGAAAGAACAAGCTGCAGAAAATCAAAATTTTGTTCAAGCAGCTAAGTTACGGGATG AGGAAAATAAGCTTACACAGGATCGGGATAAATTAATCGAAAAAGTAGAGAATAAAAACTCTAAAAAGTCGATTGTTGAT TCTGATAAGATCGCTCAAATTGTATCTGAATGGACTGGTGTGCCCGTTACTAGAATGAAGAAGAGTGAAACTAAACGTTT AGCTCATTTAGAAAGTATTTTGCATGAACGTGTAATTGGACAGGACGAAGCTATCAGTGCCGTAAGTCGAGCAATTAGAC GAAGTAGAAGCGGAATTAAGGATGAAAATCGTCCAATCGGTTCGTTCTTATTCTTAGGACCTACTGGTGTTGGTAAGACA GAATTAGCTAAGGCTCTTGCTGCAGCAGTCTTTGGCTCAGAACGGAATATTATTCGTGTAGACATGTCTGAATACATGGA TCAGATTGCAACAAGCAAATTAATTGGTTCGGCACCAGGATATGTAGGATATGAAGAGGGTGGTCAGCTCTCAGAACGTG TAAGACGTAATCCATATTCAGTAATTTTATTGGATGAAGTAGAAAAAGCTCATCCGGATGTGTTTAATTTATTGCTTCAA GTTTTGGATGAAGGATTTTTAACTGATTCTAAAGGTAGAAAAGTCGATTTTAGAAATACAATTATTATCATGACTTCTAA CCTTGGCTCACGTAGTTTACAAGAAGATAAGACAGTTGGATTTGCAGCTGATAATGCCGATAAAAATAAACTTCAACAAG AAAAAGTTACGGCAGCTGTTAAACAATTCTTCAGACCAGAATTTTTAAATAGAATTGATGAGATCGTGGTCTTTGATAGC TTAACTAAAAAACAATTGCGTGAAATTGTTAGCTTAATGACTGGTCATTTGGTAGATCGCTTAGCTAAAAAAGACGTAAC CTTAAAGATTTCACCAGCAGCTTTAGATGTATTAGCTAAAGATGGATTTGATCCAGAGATGGGCGCTCGTCCATTACGTC GTGCAATTCAACATGAACTTGAAGATGTAATTGCTGAAGATTTAATTAGTGAAAAAATTAAGGCTGACCAAATTGTAAAA GTTGGAGCTCATCAAGGTAAATTAAAATTTACAATTCTTGACGAATTAGTAATATAA Protein sequence : MEKSYSDSAKNVLEIAKEQAQNFHHRIIGTEHVLLALVIEANGDAGKLLRERNVTPTLVREEIERYTGYGSSPKATYMEM SPRLSLVLNFAKQKADELGTAQIETKHILLGLLASDQILASLILKNIGVDPRDLSQDVNDSFMDGSGEEDNVLGISSATG MKKGKSLTPNLDKVSVNLNKRAREGAIDPVIGRDKEIKRVIQILSRRTKNNPVLVGEPGVGKTAVAQGIAAAIVNHEVPD TLAKKRVMALDMGSLIAGTKYRGEFEDRMKKILKEIQQDGSVILFVDEMHTLIGAGGAEGAIDASNILKPSLARGDIQMI GATTFDEYQKYIEKDQALARRFQQVKIGEPSKEETVDILKGLRPKYEKFHNVKIEDEAINDAVEFSTRYIANRFLPDKAI DLIDEASAAVKIQAIGKSDPRLTKLDTQINDVIHQKEQAAENQNFVQAAKLRDEENKLTQDRDKLIEKVENKNSKKSIVD SDKIAQIVSEWTGVPVTRMKKSETKRLAHLESILHERVIGQDEAISAVSRAIRRSRSGIKDENRPIGSFLFLGPTGVGKT ELAKALAAAVFGSERNIIRVDMSEYMDQIATSKLIGSAPGYVGYEEGGQLSERVRRNPYSVILLDEVEKAHPDVFNLLLQ VLDEGFLTDSKGRKVDFRNTIIIMTSNLGSRSLQEDKTVGFAADNADKNKLQQEKVTAAVKQFFRPEFLNRIDEIVVFDS LTKKQLREIVSLMTGHLVDRLAKKDVTLKISPAALDVLAKDGFDPEMGARPLRRAIQHELEDVIAEDLISEKIKADQIVK VGAHQGKLKFTILDELVI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 3e-177 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003292499.1 | ATP-dependent Clp protease | VFG0079 | Protein | 0.0 | 53 |
| clpC | YP_003292499.1 | ATP-dependent Clp protease | VFG0080 | Protein | 2e-148 | 50 |
