Gene Information

Name : Rmar_0818 (Rmar_0818)
Accession : YP_003290103.1
Strain : Rhodothermus marinus DSM 4252
Genome accession: NC_013501
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 933991 - 934701 bp
Length : 711 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: aba:Acid345_3061 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGGGGAAAGCACGTCTGCTGATCATAGAAGACGACGCGGAAGTACGCGAGGCGCTGGCGCTGTGCCTGGAGACGGCGGG
CTACGAGGTGGACGCCGTCGCCACCGGCGAGGCGGGGCGCGAGAAGGCCATCACGGTGCCCGGCTACGATCTGATCATCC
TGGACGCGAGGCTTCCGGGGCGCGATGGCTTTGAGGTGCTCCGCGAGTTGCGTGAGGAGGACGGGGTAATGACGCCTGTC
CTGATGCTTACCGGGCTGAACGACCGGGAGCACCGCCTGAAGGGCTTTGAGCTGGGCGCCGACGATTACGTGGCCAAGCC
GTTTGCCCCCGAGGAGCTGCTGGCCCGCGTCGAGGCCGTCCTGCGCCGCGCAAAGCGGCGGCCGCAGCCCGAAAAGCGCC
GCTTTCGGGTGGGCGGCATCGAGGTCGACCTGGTGGACGGGACGGTGACGCGTGACGGCCAGCCGGTGCCGCTGACCGAC
ATGGAGTTCCGGCTACTGCGCTACCTGATCCTGCACCACGGCCGTACCGTCACCCGCGAGCAATTGCTCCGGGAGGTCTG
GGAGCTTCCGCCCACCGTGCAGACCCGTACCATCGATCGCCACATCAACGCCCTCCGCAAGATCATGGACGGCGAGGACG
AAACAAGCTGGCCGATCCAGAGCGTCTACGGGATCGGTTACCGGCTGGTGGGCGGGGAGTTCGTCGATTGA

Protein sequence : 
MGKARLLIIEDDAEVREALALCLETAGYEVDAVATGEAGREKAITVPGYDLIILDARLPGRDGFEVLRELREEDGVMTPV
LMLTGLNDREHRLKGFELGADDYVAKPFAPEELLARVEAVLRRAKRRPQPEKRRFRVGGIEVDLVDGTVTRDGQPVPLTD
MEFRLLRYLILHHGRTVTREQLLREVWELPPTVQTRTIDRHINALRKIMDGEDETSWPIQSVYGIGYRLVGGEFVD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rmar_0818 YP_003290103.1 winged helix family two component transcriptional regulator BAC0111 Protein 1e-34 43
Rmar_0818 YP_003290103.1 winged helix family two component transcriptional regulator BAC0347 Protein 7e-31 42
Rmar_0818 YP_003290103.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-29 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rmar_0818 YP_003290103.1 winged helix family two component transcriptional regulator VFG0596 Protein 8e-27 41