Gene Information

Name : Rmar_0765 (Rmar_0765)
Accession : YP_003290051.1
Strain : Rhodothermus marinus DSM 4252
Genome accession: NC_013501
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 888988 - 889797 bp
Length : 810 bp
Strand : -
Note : KEGG: cja:CJA_1726 flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
ATGCGTCGTAAGCTGTCGCTTCTGGGCCTGTCGCTGTGCCTGCTGCTCCCGGGGCCTGCTCTGCCGGCCCTCGCCCAGCA
GACGCAAACCCAGCAGACCACCCCGCAGACACCGCCTGCTTCCGGCGGCAGCACGCTGCTGGGCCCGCTCCCCCGCATTC
AGCTCGGCGAGAACGAAGACTTCGCGCTGCCGCTGCAGCTGCTGCTGCTGCTCACCATCCTGTCGCTGGCTCCGGCCATC
ATCATCCTGACCACCAGTTTTACCCGACTGGTGGTCATCTTCAGCATCCTGCGGACGGCACTCGGCCTGCAACAATCCCC
GCCCACGCAGGTGCTGATCGGGCTGGCGCTCTTTCTGACGCTGTTCATCATGTACCCGGTGTTCGATCAGATTCACGACG
AGGCGCTGCGGCCCTATCTGGACGGCGAGATCACCCAGCAGGTGGCGCTCGAACGGGCCGCCGCGCCGCTGCGCGCTTTC
ATGCTGCGCCAGACCCGCGAAAAAGACCTGATGCTGTTCATGGACCTGGCCAACGTCGAAGCCTTCGACCGGCCCGAAGA
CGTGCCCTTCTACATTCTGGTCCCGGCCTTCGTGATCAGCGAACTGCGCATCGCCTTCCAGATCGGCTTCATGATCTTTC
TGCCCTTTCTGCTGGTGGACTTGATCGTCGCCAGCGTGCTGATGAGCATGGGCATGATGATGCTGCCGCCGGTCATGATC
TCGCTGCCGCTCAAGCTGCTACTGTTCGTGCTGGCCGACGGCTGGTATCTCGTGGTAGAATCGGTCGTTCGCGGTTATCT
CGGCGGTTAA

Protein sequence : 
MRRKLSLLGLSLCLLLPGPALPALAQQTQTQQTTPQTPPASGGSTLLGPLPRIQLGENEDFALPLQLLLLLTILSLAPAI
IILTTSFTRLVVIFSILRTALGLQQSPPTQVLIGLALFLTLFIMYPVFDQIHDEALRPYLDGEITQQVALERAAAPLRAF
MLRQTREKDLMLFMDLANVEAFDRPEDVPFYILVPAFVISELRIAFQIGFMIFLPFLLVDLIVASVLMSMGMMMLPPVMI
SLPLKLLLFVLADGWYLVVESVVRGYLGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 6e-23 44
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 7e-22 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-22 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-22 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-22 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 7e-22 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rmar_0765 YP_003290051.1 flagellar biosynthetic protein FliP VFG0188 Protein 3e-25 44
Rmar_0765 YP_003290051.1 flagellar biosynthetic protein FliP VFG0519 Protein 8e-23 42
Rmar_0765 YP_003290051.1 flagellar biosynthetic protein FliP VFG0044 Protein 5e-24 42
Rmar_0765 YP_003290051.1 flagellar biosynthetic protein FliP VFG0394 Protein 2e-23 41