Gene Information

Name : Rmar_0068 (Rmar_0068)
Accession : YP_003289365.1
Strain : Rhodothermus marinus DSM 4252
Genome accession: NC_013501
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 71253 - 71999 bp
Length : 747 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_7937 ABC transporter related

DNA sequence :
ATGACGGCAACGACCGACAACCGGCGCCCGCTCATTCAGCTCCGCGACGTGACCAAGATCTACAGGATGGGCACCCAGCA
GGTGCGGGCGCTCGATGGCGTCTCGCTGGACGTGTACCCGAACGAGTACGTGGCCATCATGGGCCCCTCGGGTTCGGGAA
AGTCCACGCTTATGAACATCCTCGGCTGCCTCGATACGCCCACCGGCGGCACCTACTATCTGAACGGCCGCGACGTGAGC
CGGCTTTCGGACGACGAACTGGCCCGCATTCGCAACAAAGAAGTGGGGTTCGTCTTTCAAACGTTCAACCTGCTCCCCCG
CGTGAACTGTCTGCAGAACGTCGAGCTGCCCCTGATCTACGCAGGCGTGCGCAAAAGTCAGCGGCGCGCGCTGGCCGAGG
CGGCGTTGCGCAGCGTGGGGCTGGGCGACCGGATGCATCACAAGCCCAACGAACTCTCCGGCGGGCAGCGCCAGCGCGTG
GCCATCGCCCGGGCGCTGGTCAACAATCCGTCGATCATCCTGGCCGACGAGCCCACCGGCAACCTCGACTCGAAGACCGG
CGAGGAGATCATGCGGCTGTTCGAGCTGCTGTACCGCCAGGGGCACACGCTGCTGGTGGTCACGCACGAGCACGACATCG
CCCACCACGCCCGCCGGATCATTCACCTTCGAGACGGGCGGATCGAACGCGACGAGCCGGTGGCACAGCCACTGCTGGCA
GACCTGGACCTGAGTACGGCGGTCTGA

Protein sequence :
MTATTDNRRPLIQLRDVTKIYRMGTQQVRALDGVSLDVYPNEYVAIMGPSGSGKSTLMNILGCLDTPTGGTYYLNGRDVS
RLSDDELARIRNKEVGFVFQTFNLLPRVNCLQNVELPLIYAGVRKSQRRALAEAALRSVGLGDRMHHKPNELSGGQRQRV
AIARALVNNPSIILADEPTGNLDSKTGEEIMRLFELLYRQGHTLLVVTHEHDIAHHARRIIHLRDGRIERDEPVAQPLLA
DLDLSTAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-31 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-31 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-31 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-31 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rmar_0068 YP_003289365.1 ABC transporter NC_012469.1.7686878. Protein 1e-61 60
Rmar_0068 YP_003289365.1 ABC transporter NC_008702.1.4606598. Protein 7e-47 54
Rmar_0068 YP_003289365.1 ABC transporter CP001581.1.gene798.p Protein 5e-36 43
Rmar_0068 YP_003289365.1 ABC transporter CP001581.1.gene598.p Protein 3e-39 42