Gene Information

Name : Rmar_1277 (Rmar_1277)
Accession : YP_003290555.1
Strain : Rhodothermus marinus DSM 4252
Genome accession: NC_013501
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1498815 - 1499558 bp
Length : 744 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: jan:Jann_2081 ABC transporter related

DNA sequence : 
ATGAAGTGGGCGATTGAAATCGAAGACCTGACCGTTGCCTACCAGCAGCAGCCGGTGCTCTGGGACGTGGACGCGGTGAT
TCCGGCCGGCCAGATGACCGCGATCGTTGGCCCCAACGGCGCCGGCAAGAGCACGCTGCTCAAGGCCGTGCTGGGGATTG
TGCGGCCGGCCGCCGGGCGCATCCGGGTGCTGGGCCGGCTGTTTCGTGCCCGGGAACGCCGGGTGGCCTATGTGCCTCAG
CGGGCCGAACTGGACTGGGACTTTCCGGCGACCGTGTTCGACGTGGCGCTGATGGGCACCTACGGACGCGTGGGCTGGCT
GCGTCGCCCCGGAGCAGCCGAACGTACCCTGGCTCGGACGGCGCTCGAACGCGTCGGGATGGCCGAGCTGGCGGACCGGC
CGATCGGTCAGCTTTCCGGCGGCCAGCAACAGCGCGTGCTGCTAGCCCGCGCGCTGGCTCAGGAAGCGGAGCTTTACCTG
CTCGACGAGCCGTTTCAGGGCGTGGACGCCCCTACCGAGGCCACGCTGCTCGACGTGCTACGATGGCTCAAGCAGCAGGG
CAAGACCATTGTAGTGGTCCATCACGACCTGTCCACCGTGGCCGAATACTTCGACTGGGTGGTGCTGCTGAACGTCCAGT
GCATTGCCTGTGGGCCAGTGGCCGAGGCCTTCACCCCCGAAAATCTGCGGCGCACTTACGGCGGCCGCATGGTGGTCCCG
GCTCCGACGGTGAATCCGACGTAG

Protein sequence : 
MKWAIEIEDLTVAYQQQPVLWDVDAVIPAGQMTAIVGPNGAGKSTLLKAVLGIVRPAAGRIRVLGRLFRARERRVAYVPQ
RAELDWDFPATVFDVALMGTYGRVGWLRRPGAAERTLARTALERVGMAELADRPIGQLSGGQQQRVLLARALAQEAELYL
LDEPFQGVDAPTEATLLDVLRWLKQQGKTIVVVHHDLSTVAEYFDWVVLLNVQCIACGPVAEAFTPENLRRTYGGRMVVP
APTVNPT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 4e-36 45
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 5e-36 45
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 7e-40 45
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 7e-40 45
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-40 45
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-40 45
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 9e-41 45
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 1e-17 41
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 1e-17 41
unnamed CAD33755.1 putative ABC transporter ATP-binding protein Virulence PAI I 536 Protein 2e-26 41
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 1e-17 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rmar_1277 YP_003290555.1 ABC transporter BAC0400 Protein 1e-61 63
Rmar_1277 YP_003290555.1 ABC transporter BAC0350 Protein 6e-41 45
Rmar_1277 YP_003290555.1 ABC transporter BAC0440 Protein 2e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rmar_1277 YP_003290555.1 ABC transporter VFG0526 Protein 5e-41 45
Rmar_1277 YP_003290555.1 ABC transporter VFG1496 Protein 1e-26 41