|
Name : VEA_003372 (VEA_003372) Accession : YP_003285997.1 Strain : Genome accession: NC_013456 Putative virulence/resistance : Virulence Product : Type III secretion inner membrane channel protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 1926780 - 1928897 bp Length : 2118 bp Strand : + Note : LcrD, HrcV, EscV, SsaV DNA sequence : ATGAATAAGTTGATCGATATTTTAAACAAGGTAGGGCAACGTAAAGACATTATGCTTGCTGTGATGTTGCTCGCGATCGT CTTTATGATGATATTGCCACTGCCTACCGCGCTGGTGGATGTGCTGATTGGCACCAACATGAGTATTGCGGTGGTGCTGC TTATGTTAGCGATTTACATCACTACGCCGCTTGAGTTCTCAGCGTTTCCCGCGGTGCTACTGATCACGACATTGTTTCGT TTGTCTTTATCCATCACGACAACCCGTTTGATCTTGCTGCAAGGCGATGCTGGTCAAATCGTTTATACCTTCGGTAACTT CGTTGTGGGCGGTAACTTAGTGGTCGGTATCGTTGTGTTCCTGATCATTACCATTGTTCAGTTTATGGTGATCACCAAAG GCTCGGAGAGGGTTGCAGAAGTTAGTGCGCGATTCTCACTTGATGCGATGCCTGGTAAGCAGATGAGTATTGACGGTGAC ATGCGCGCTGGGGTGATTGACGTACACGAAGCACGGCACCGACGATCACTGATTGAAAAAGAAAGCCAAATGTATGGCTC GATGGATGGCGCGATGAAGTTCGTTAAAGGCGACTCCATTGCTGGTTTGGTCATCATTGTGGTCAACATCTTAGGTGGCG TCACGATCGGGGTAACGCAAAAAGGCATGAGTGCTTCTGAAGCGCTTGAGCTGTTTGCGATTTTGACCGTTGGCGATGGT TTGGTGTCGCAAATTCCGGCTCTGTTTATCGCGATTACGGCTGGTATTATCGTGACGCGTGTTTCTCATGAAGACTCTTC TGATCTTGGTTCGGACATTGGTGGGCAGGTCATTGCTCAGCCACGTGCGCTTCTTATTGGCGGTGTGCTTTTGGTGCTCT TCGCACTGATTCCTGGTTTTCCAAAAATTACTTTTCTGGTCTTGGCCACAGTGGTTGGTGGTGGTGGTTTCTTCCTTTTC TATCAACAGAAAAAACAGGCTGCATCAGATACTACCGACTTATCAAGCTTTGTTTCGCAAGGGGCGGGTTCACCAGCAGC GAAGCCAAGCAAACCAACCCCATCTAGAAACAGTAAAGGCAAATTAGGTGAGCAAGAAGAGTTCGCCATGACGGTCCCAC TCTTAATTGATCTTGACGCGAGCCTTCAGGAAAGCTTGGAAGCGGTCGCATTGAATGAAGAGCTAGCAAGGGTGAGGCGC GCACTATATCTCGACCTCGGCGTGCCTTTCCCGGGTATCCACCTGCGTTTTAACGAGGGGATGCAAAATGGCGAATATTT AATTCAGTTACAAGAAGTTCCGGTTGCACGAGGACGAATTGTAAAAGACCAACTTTTGGTGACAGAAGGGAATGAGCAGA TCGACTTATTAGGCGTGCCTTATGAGCAAGATGAAGATTTTCTACCCGGTATTTCTAGCATTTGGGTGGCACAAAGTTAC GAGCAAAAACTCACCACTAGCCATGTCGGCTTTCTCACACCCGACAGAATTTTAACGTACCACTTGTCTCATGTTCTCAA GGAGTACGCACAAGACTTTATTGGTATTCAGGAGACGCGTTATCTGTTGGAGCAGATGGAAGGTAGTTATTCGGAGCTAG TTAAAGAGGCCCAGCGCATTGTCCCGTTACAAAAAATGACGGAAATCTTGCAACGCTTGGTTTCTGAAGACATTTCCATC CGAAACCTTCGCGTGATCTTGGAAGCCATGGTTGAGTGGGGCCAAAAAGAGAAAGATGTTGTACAGCTGACGGAGTACAT TCGTTCCAGCTTAAAACGTTACATTTGCTACAAATACGCGAGTGGACAAAACATGTTGCCCGCTTACTTATTGGATCAAA GTCTCGAAGACACAATACGCAGCGGTATTCGTCAAACCTCTGCAGGAAGTTATTTAGCGTTAGACCCGTCTGTAACTCAA CAATTTGTGAGTGATGTGAAACAGACCATCGGTGATTTAAGCCGCATGCCGAATAAGCCTGTGTTAGTTGTGTCTATGGA TGTACGCCGATATGTGCGAAAGCTTATTGAATCGGAATACTACGATCTGCCCGTTTTGTCATTTCAAGAATTAACCCAGC AAATCAATATTCAGCCACTTGGAAGGGTGGGGATGTAA Protein sequence : MNKLIDILNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLMLAIYITTPLEFSAFPAVLLITTLFR LSLSITTTRLILLQGDAGQIVYTFGNFVVGGNLVVGIVVFLIITIVQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGD MRAGVIDVHEARHRRSLIEKESQMYGSMDGAMKFVKGDSIAGLVIIVVNILGGVTIGVTQKGMSASEALELFAILTVGDG LVSQIPALFIAITAGIIVTRVSHEDSSDLGSDIGGQVIAQPRALLIGGVLLVLFALIPGFPKITFLVLATVVGGGGFFLF YQQKKQAASDTTDLSSFVSQGAGSPAAKPSKPTPSRNSKGKLGEQEEFAMTVPLLIDLDASLQESLEAVALNEELARVRR ALYLDLGVPFPGIHLRFNEGMQNGEYLIQLQEVPVARGRIVKDQLLVTEGNEQIDLLGVPYEQDEDFLPGISSIWVAQSY EQKLTTSHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMEGSYSELVKEAQRIVPLQKMTEILQRLVSEDISI RNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYASGQNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQ QFVSDVKQTIGDLSRMPNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVGM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 0.0 | 75 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 5e-104 | 46 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-104 | 46 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 5e-106 | 45 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 3e-106 | 45 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 2e-106 | 45 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 3e-106 | 45 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 2e-106 | 45 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 2e-106 | 45 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 4e-106 | 45 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 1e-106 | 45 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 4e-107 | 45 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 7e-106 | 45 |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 2e-106 | 45 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 2e-106 | 45 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 1e-106 | 45 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 1e-114 | 45 |
| invA | NP_461817.1 | needle complex export protein | Virulence | SPI-1 | Protein | 1e-98 | 43 |
| invA | YP_217815.1 | invasion protein | Virulence | SPI-1 | Protein | 1e-98 | 43 |
| invA | NP_457290.1 | possible secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 1e-98 | 43 |
| invA | NP_806499.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 1e-98 | 43 |
| ECs3731 | NP_311758.1 | EivA | Not tested | LIM | Protein | 5e-102 | 43 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 2e-94 | 42 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 2e-94 | 42 |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 1e-93 | 42 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 1e-93 | 42 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 6e-94 | 42 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 4e-94 | 42 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 5e-94 | 42 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 9e-81 | 41 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-79 | 41 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 2e-78 | 41 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 8e-81 | 41 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 2e-78 | 41 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 2e-87 | 41 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 3e-94 | 41 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 2e-93 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| VEA_003372 | YP_003285997.1 | Type III secretion inner membrane channel protein | VFG0384 | Protein | 0.0 | 75 |
| VEA_003372 | YP_003285997.1 | Type III secretion inner membrane channel protein | VFG0198 | Protein | 0.0 | 73 |
| VEA_003372 | YP_003285997.1 | Type III secretion inner membrane channel protein | VFG0064 | Protein | 1e-180 | 58 |
| VEA_003372 | YP_003285997.1 | Type III secretion inner membrane channel protein | VFG0813 | Protein | 8e-107 | 45 |
| VEA_003372 | YP_003285997.1 | Type III secretion inner membrane channel protein | VFG0729 | Protein | 2e-107 | 45 |
| VEA_003372 | YP_003285997.1 | Type III secretion inner membrane channel protein | VFG2126 | Protein | 5e-124 | 45 |
| VEA_003372 | YP_003285997.1 | Type III secretion inner membrane channel protein | VFG0557 | Protein | 5e-99 | 43 |
| VEA_003372 | YP_003285997.1 | Type III secretion inner membrane channel protein | VFG1006 | Protein | 5e-100 | 42 |
| VEA_003372 | YP_003285997.1 | Type III secretion inner membrane channel protein | VFG0514 | Protein | 2e-94 | 42 |
| VEA_003372 | YP_003285997.1 | Type III secretion inner membrane channel protein | VFG2461 | Protein | 8e-92 | 41 |
