Gene Information

Name : VEA_003361 (VEA_003361)
Accession : YP_003285986.1
Strain :
Genome accession: NC_013456
Putative virulence/resistance : Virulence
Product : type III secretion protein YscS
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 1919531 - 1919797 bp
Length : 267 bp
Strand : -
Note : -

DNA sequence : 
ATGCATTCTGCTGAAATCATTCATTTCACGACTCAAGCATTAACCCTAGTTTTGTACTTGTCGTTACCGCCGATTTTAGT
CGCAGCATTGGTTGGTACATTGGTGTCGCTTATTCAGGCGTTAACTCAGGTCCAAGAACAAACGTTAGGCTTTGTGGTCA
AGCTTATCGCGGTCATTATTACGCTGTTCGTCACAACGCAATGGCTAGGGGCAGAGCTCCACGCCTTCGCCTCGCTTGCT
ATGGATAAAATTCCTCAAATACGATGA

Protein sequence : 
MHSAEIIHFTTQALTLVLYLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVIITLFVTTQWLGAELHAFASLA
MDKIPQIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscS AAO18039.1 LscS Virulence TTSS locus Protein 3e-24 69
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 5e-13 50
hrcS AAT96147.1 HrcS Virulence T-PAI Protein 2e-10 49
hrcS AAT96201.1 HrcS Virulence T-PAI Protein 2e-10 49
hrcS AAG33885.1 HrcS Virulence Hrp PAI Protein 1e-10 49
hrcS ABQ88360.1 HrcS Virulence Hrp PAI Protein 1e-07 49
hrpO AAB05076.1 HrpO Virulence Hrp PAI Protein 1e-07 49
hrcS NP_791221.1 type III secretion protein HrcS Virulence Hrp PAI Protein 2e-10 49
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 1e-10 48
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 1e-10 48
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 1e-10 48
spaQ AAS66866.1 SpaQ Not tested SSR-2 Protein 2e-09 48
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 1e-11 47
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 2e-11 47
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 2e-11 47
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 2e-11 47
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 2e-11 47
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 3e-10 47
ECs3724 NP_311751.1 EpaQ Not tested LIM Protein 2e-10 46
epaQ AAZ31292.1 EpaQ Virulence ETT2 Protein 1e-10 46
escS AFO66341.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-12 43
escS AFO66401.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-12 43
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 1e-06 43
spaQ YP_217808.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 1e-08 42
spaQ NP_457283.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-08 42
spaQ NP_806492.1 virulence-associated secretory protein Virulence SPI-1 Protein 1e-08 42
spaQ NP_461810.1 needle complex export protein Virulence SPI-1 Protein 1e-08 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VEA_003361 YP_003285986.1 type III secretion protein YscS VFG0395 Protein 7e-27 71
VEA_003361 YP_003285986.1 type III secretion protein YscS VFG0187 Protein 6e-18 66
VEA_003361 YP_003285986.1 type III secretion protein YscS VFG0043 Protein 1e-17 56
VEA_003361 YP_003285986.1 type III secretion protein YscS VFG0520 Protein 4e-12 47
VEA_003361 YP_003285986.1 type III secretion protein YscS VFG1772 Protein 7e-11 43
VEA_003361 YP_003285986.1 type III secretion protein YscS VFG2454 Protein 3e-05 42
VEA_003361 YP_003285986.1 type III secretion protein YscS VFG0550 Protein 4e-09 42
VEA_003361 YP_003285986.1 type III secretion protein YscS VFG2132 Protein 9e-10 42
VEA_003361 YP_003285986.1 type III secretion protein YscS VFG1013 Protein 5e-09 41