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Name : VEA_003337 (VEA_003337) Accession : YP_003285962.1 Strain : Genome accession: NC_013456 Putative virulence/resistance : Virulence Product : type III secretion system outer membrane pore YscC Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 1899001 - 1900815 bp Length : 1815 bp Strand : + Note : - DNA sequence : GTGAGCTTTGCTCCGTTGGGATTCGCACAAGCAACAGACTTACACTGGCCCGAACAACCATTCCGATACTATGCAGATAA CGACTCATTAAAAGAGTTGTTGAATAACTTTGGCGCAAACTATCGCGTTTCGGTTTCTGTGAGTGACAAAGTTAATGATC GAGTGAGTGGACGTTTTACTCCTGATGATCCGGCTGAGTTCCTCGACTACTTATCGCAAGTCTATAACTTGATGTGGTAT TTCGATGGTGCCGTCTTACATGTCTATAAGGCGACAGAAACGCGCTCACGTTTACTCCAATTAGAATTATTGACCGCCAG AGAGCTACGAAGCACGTTAATTTCCACTGGAGTGTGGGATTCGCGCTATGGGTGGAGGGCCGCTGAGAGTAAAGGGTTGG TTTATCTTGCAGGTCCTCCACGTTATGTCGACTTAGTTGTACAAACGGCCGAAGCATTAGAAACGCGCCTGCTGCAGAAA TCGAATTCAACCGACGAGTTATTCGTTGAAATAATTCCTTTGAAGTACGCTTCTGCAACGGATAGAGAAATTGCATATCG AGATCAGACCATTACGGTTCCGGGTATCGCATCGGTTTTAAAGCGAGTCGTGTCTGGTGTTCAAACTCAAGTGACGAGTG CGTCGAACAAAGAAGTTACCAGTTCAGATACGCCTGTAAAAAGCAATAAAACCGCCTCAGTTCATGGCGGAGCAACGGTT GAAGCAGAGCCGGGCCTTAATGCGATTATTGTTCGTGATACTCAAGCGCGATTACCGCTCTATCGCAAACTGGTCGCTCA ATTGGACCAACCGCAATCAAGAATTGAAGTTGCGTTATCGATTGTCGACATCAGTGCCAACGATTTAAGTCAGTTAGGCG TGGATTGGCGAGCGGGAGTGTCTGTCGGAAATAATCGAATTGTTGATATCAAAACAACAGGGGATGTGAGTTCGGGTGAT GTGACTCTCGGCAGCGGACAAAATTTTAAGTCTTTGCTTGATTCAACCAATCTGAATTACCTGTTGGCTCAAATCCGTTT ATTGGAATCTCAAGGCAGTGCTCAAGTGGTTTCAAGACCAACACTGCTAACCCAAGAAAATGTCGAAGCTGTACTGAACA ACAGCAGCACGTTTTACGTCAAGCTGGTTGGTAAAGAGACCGCAGCACTGGAAGAGGTCACGTACGGCACGTTACTGAGA ATTGTCCCGCGTATCGTTGGTGACAGGTTTGCTGCCCGACCAAAAATCAATCTGAGCCTTCATCTCGAAGACGGGGCAAA GATTACCGATGGTGGTGTCGACGACCTTCCTTCCGTTCGTAAAACTGAAATCAGTACCTTGGCGACGGTGAAGCAAGGAC AGAGCTTGCTCATCGGTGGTGTTTATCGAGATGAAGTGAGTCATCAGTTACGTAAAGTACCACTGTTGGGAGACATCCCA TATTTAGGTGCGTTGTTTAGAAGTAATACCAACACTAAACGCCGCACGGTGCGCATGTTTATTCTAGAACCGCGAATCGT TGTGGATGGTATTGGCGATAGTGTGTTGATTGGTAATGAGTACGATCTGCGACCAAGCATTGGCAAGCTCAACAACATTT CCAACAACAGTGCTGAATTTAAATCGGTCGTCGAAGTGTATAGCTGCACATCAAAGACTCAAGCAGAGCGCTATCAGCAA GACTTATTGTCACAGCAACAGTCGTCTCAATTGACGCAGTGCCAATTGCCGACAGGGCAAAAGGGTTGGCGTGTAAAAGT ATTGGAATGCGATGACTCACAAAGTGAGTGTGTGCATCCATCAGAGGAGCCTTAA Protein sequence : MSFAPLGFAQATDLHWPEQPFRYYADNDSLKELLNNFGANYRVSVSVSDKVNDRVSGRFTPDDPAEFLDYLSQVYNLMWY FDGAVLHVYKATETRSRLLQLELLTARELRSTLISTGVWDSRYGWRAAESKGLVYLAGPPRYVDLVVQTAEALETRLLQK SNSTDELFVEIIPLKYASATDREIAYRDQTITVPGIASVLKRVVSGVQTQVTSASNKEVTSSDTPVKSNKTASVHGGATV EAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGVSVGNNRIVDIKTTGDVSSGD VTLGSGQNFKSLLDSTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAALEEVTYGTLLR IVPRIVGDRFAARPKINLSLHLEDGAKITDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIP YLGALFRSNTNTKRRTVRMFILEPRIVVDGIGDSVLIGNEYDLRPSIGKLNNISNNSAEFKSVVEVYSCTSKTQAERYQQ DLLSQQQSSQLTQCQLPTGQKGWRVKVLECDDSQSECVHPSEEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscC | AAO18033.1 | LscC | Virulence | TTSS locus | Protein | 2e-123 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| VEA_003337 | YP_003285962.1 | type III secretion system outer membrane pore YscC | VFG0402 | Protein | 5e-133 | 48 |
| VEA_003337 | YP_003285962.1 | type III secretion system outer membrane pore YscC | VFG0211 | Protein | 1e-126 | 47 |
