Gene Information

Name : VEA_003169 (VEA_003169)
Accession : YP_003285794.1
Strain :
Genome accession: NC_013456
Putative virulence/resistance : Unknown
Product : integron integrase IntI4
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 1744165 - 1745127 bp
Length : 963 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAAGTCAGTTTTTACTTAGTGTAAAAGAGCACATGCTTACTCGTCATTATGCGAATAAAACCATCGAAAGTTATCT
ATTTTGGATAAAACGCTTTATCACTTTCCACCAGCTTGCCCACCCTTCAACACTAGCAGAAGATGATGTAGTTCAGTTCC
TGAGTTACTTAGCGGTAAAAGAAAAAGTTGCGGTAAAAACGCAAGCTTTGGCACTGAACTCAATATCATTTTTATATCGT
GATTATTTCAAAACTCCACTATCACTTGATATGAGATTTCAGAAATCCCTGACCGAAAAGAAACTTCCCGTTGTATTAAC
TAGGGAGGAGATCCGACGATTCGTTCAACATATCGACCCGAGGTATAAACTCCATATTCAGCTGCTTTATGGCTCAGGGC
TTCGAGTCATGGAGTGTTTGCGCTTAAGAGTTCAGGACATCGATTATGATTATGGCGCAGTTCGTGTTTGGCAAGGAAAA
GGAGGTAAAAATCGTACCGTAACGTTAGCAAAAGAGCTACATGAGCCGCTTAAAGCTCAGGTTAATTTAGCAAGAGATTA
CTATTTTAAAGATAGACACATGCCTGGTTATGCGGGTGTATACATCTCTGAAGGTTTACGACGTAAATACCCAAAAGCGG
AGCTAGATTTTAACTGGCACTTTTTATTCCCATCAACAAAGTTAAGTACAGATCGGGACACCGGAGAGCTCAGAAGGCAT
CATATCAATGAAAGTGCAATACAAAGAGCGGTAAAGCGCGCTGCAACGGATGCGTGTATCGAGAAAACAGTAACATGTCA
TACACTCAGGCACAGCTTTGCCACGCATTTATTAGAGTCTGGTGCAGATATTAGAACAGTACAAGAGCAGCTTGGTCACA
CCGATGTAAAAACCACCCAGATTTATACTCACGTTATCGAGCGCGGGGCTGGCGGCGTGTTGAGTCCATTATCCAGCCTT
TAG

Protein sequence : 
MKSQFLLSVKEHMLTRHYANKTIESYLFWIKRFITFHQLAHPSTLAEDDVVQFLSYLAVKEKVAVKTQALALNSISFLYR
DYFKTPLSLDMRFQKSLTEKKLPVVLTREEIRRFVQHIDPRYKLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGK
GGKNRTVTLAKELHEPLKAQVNLARDYYFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSTDRDTGELRRH
HINESAIQRAVKRAATDACIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHVIERGAGGVLSPLSSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 4e-47 45
int1 YP_005160012.1 integrase Not tested Not named Protein 2e-51 45
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 8e-61 45
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 1e-60 45
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 1e-60 45
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 6e-61 45
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 8e-61 45
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 1e-60 45
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 1e-60 45
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 8e-61 45
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 1e-60 45
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 1e-60 45
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 8e-61 45
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 1e-60 45
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 8e-61 45
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 8e-61 45
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 1e-60 45
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 1e-60 45
intI1 AAK02045.1 integrase Not tested SGI1 Protein 1e-60 45
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 8e-61 45
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 8e-61 45
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 1e-60 45
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 8e-61 45
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 8e-61 45
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 1e-60 45
intI YP_001844881.1 integrase Not tested AbaR20 Protein 1e-60 45
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 6e-61 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VEA_003169 YP_003285794.1 integron integrase IntI4 VFG1028 Protein 6e-61 45