Gene Information

Name : CtCNB1_0468 (CtCNB1_0468)
Accession : YP_003276510.1
Strain : Comamonas testosteroni CNB-1
Genome accession: NC_013446
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 512305 - 513054 bp
Length : 750 bp
Strand : +
Note : COG1338, FliP, flagellar biosynthesis pathway

DNA sequence : 
ATGTCTAAATTCGTCTCTCGTGCTGCTGCCGCTGTCCTGCTGGCCATGCCCCTGATGGCCGCAGCCCAGAGCGCACCCGC
CAGTCTGCCGCTGCTGGTAGGCCAGGGCGCAGGCGGCACCAGTTATTCGGTGCCCATCCAGACACTGCTGTTTTTCACGG
CGCTGTCGTTCCTGCCCGCCATCTTGCTGTTGATGACGGGCTTTACCCGCATCGTCATTGTGCTGAGCCTGCTGCGCCAG
GCGCTGGGCACGCAGTCCGCGCCGCCCAATCAGGTGGTGATCGGTCTGTCGCTGTTTCTCACCATGTTTGTGATGGGGCC
GACGCTGGACAAGGTCTATCAGGACGCCTATCTGCCCTATACGCAAAACAGCATCAGCTTCGAGCAGGCCATGGAAAAGG
CCGAAGCCCCCATGCGCGGCTTCATGCTCAAGCAGACGCGCCAGTCGGACTTTGCTCTGTTCAAGCGCCTGGCCAAGCTG
GATGCGAATGTCACGGCGGAAACAGCACCTCTGCGTGTGCTGGTGCCGGCCTTTGTGACCAGCGAGCTGAAAACGGCTTT
TCAGATCGGCTTCATGATCTTCATTCCGTTTCTGGTCATCGACATGGTGGTGTCTTCCATCCTCATGTCGCTGGGCATGA
TGATGCTTTCGCCCGTGCTGGTGGCCCTGCCTTTCAAGCTCATGCTGTTTGTGCTGGCCGATGGCTGGAACCTGATCATC
GGCTCTCTGGCGGCGAGCTTTGCGACATGA

Protein sequence : 
MSKFVSRAAAAVLLAMPLMAAAQSAPASLPLLVGQGAGGTSYSVPIQTLLFFTALSFLPAILLLMTGFTRIVIVLSLLRQ
ALGTQSAPPNQVVIGLSLFLTMFVMGPTLDKVYQDAYLPYTQNSISFEQAMEKAEAPMRGFMLKQTRQSDFALFKRLAKL
DANVTAETAPLRVLVPAFVTSELKTAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLII
GSLAASFAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escR AAL57527.1 EscR Virulence LEE Protein 2e-25 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-25 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-25 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-25 42
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-25 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-25 42
escR AAC31528.1 L0049 Virulence LEE Protein 2e-25 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-25 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-25 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 8e-25 42
escR AAK26700.1 EscR Virulence LEE Protein 2e-25 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-24 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-24 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-24 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-24 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-24 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-25 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-25 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-25 41
escR AAC38369.1 EscR Virulence LEE Protein 8e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CtCNB1_0468 YP_003276510.1 flagellar biosynthetic protein FliP VFG2338 Protein 1e-62 67
CtCNB1_0468 YP_003276510.1 flagellar biosynthetic protein FliP VFG2494 Protein 8e-61 64
CtCNB1_0468 YP_003276510.1 flagellar biosynthetic protein FliP VFG1259 Protein 5e-58 63
CtCNB1_0468 YP_003276510.1 flagellar biosynthetic protein FliP VFG2016 Protein 2e-49 54
CtCNB1_0468 YP_003276510.1 flagellar biosynthetic protein FliP VFG0827 Protein 9e-26 42
CtCNB1_0468 YP_003276510.1 flagellar biosynthetic protein FliP VFG0519 Protein 2e-25 41
CtCNB1_0468 YP_003276510.1 flagellar biosynthetic protein FliP VFG0715 Protein 5e-25 41