Gene Information

Name : CtCNB1_3426 (CtCNB1_3426)
Accession : YP_003279468.1
Strain : Comamonas testosteroni CNB-1
Genome accession: NC_013446
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 3873541 - 3874821 bp
Length : 1281 bp
Strand : +
Note : COG1593, DctQ, TRAP-type C4-dicarboxylate transport system

DNA sequence : 
ATGGTCGTTACCCTGATTTTTCTCGCCGTGCTGATAGGCGGCATGGTGATCGGCATGCCGATTGCGCATGCATTGATACT
CACCGGTGTTGCACTGATGTGGCACCTGGACTTTTTCGACACCCAGCTGCTCGCGCAGAACCTGCAAGCCGGGTTCGACA
ATTTCCCGCTGCTGGCCGTGCCATTCTTCATTCTGGCAGGTGAGCTGATGAATGCCGGCGGCCTGTCGCGCCGCATCATC
GATCTGGCCCGCGCCTTTGTCGGTCATATCCCGGGTGGCCTCGGTTACGTGGCCATCGGCGCAGCCGTGCTGCTGGCCTC
GATGAGCGGATCGGCCATTGCCGACACCGCCGCGCTGGCCACCATCTTGCTGCCGATGATGCGCGACCAGAAGTATCCCG
ATAGCTACAGCGCCGGCCTGCTGGCGTCGGGCGGCATCATCGCCCCCATCATTCCGCCTTCGATGCCGTTCGTGATCTAC
GGCGTCACCACCAACACCTCCATCAGCAAGCTGTTTCTCTCGGGCGTCGTTCCCGGCCTGTTCATGGGCGGTTTTCTGAT
TGCCGCCTGGTGGTTCATCGCGCGCAAATACCAGCTGACCTCGGGTGAACGCGTGAGCTGGGGCCTGCGCCTCAAGGCAC
TGGCCAAGAGCTTCTGGGCCATGATGATGCCTGTCATCATTCTGGGTGGCCTCAAGGGCGGCGTCTTCACGCCGACAGAA
GCCGCAGTGGTGGCCGCGGTCTACGCGCTGTTCGTGTCCATGGTGGTCTATCGGGAGATGAGCTGGAGCAGGCTCTACGA
AGTCTTTCTGGGCGCATCCAAGACCACCGCCGTGGTGATGTTCCTCTGCGGAGCGGCCACTGTGACCGCCTACATGATCA
CGCTCGCCGACCTGCCCAATATGCTGGCCGACAGCTTCTCGGGTCTGCTGGATCAGCCCATGCTCTTCATGGCCGTGATG
ATGCTCTTCCTGCTCGTGGTCGGCACCGCCATGGATCTGACCCCGACCATTCTGATCTTCGGTCCGGTCTGCGCGCCGCT
GGCCGTCAAGGCCGGCATCGATCCCGTGTACTTCGGCTTTATGTTCATCTATGTGGGCTGTATCGGCCTGATCACCCCTC
CGGTGGGCACGGTGCAGAACGTGGTGGCCGGGGTCGGCAGGCTGCGCATGGAGACCGTGATCAAGGGCACGAATCCCTTC
CTGATGGTTTATGTGCTGCTGGCCGTGCTCTTCGTGATCTTCCCTCAGCTGGTCACGGGTCCGCTCAAATGGATGCACTG
A

Protein sequence : 
MVVTLIFLAVLIGGMVIGMPIAHALILTGVALMWHLDFFDTQLLAQNLQAGFDNFPLLAVPFFILAGELMNAGGLSRRII
DLARAFVGHIPGGLGYVAIGAAVLLASMSGSAIADTAALATILLPMMRDQKYPDSYSAGLLASGGIIAPIIPPSMPFVIY
GVTTNTSISKLFLSGVVPGLFMGGFLIAAWWFIARKYQLTSGERVSWGLRLKALAKSFWAMMMPVIILGGLKGGVFTPTE
AAVVAAVYALFVSMVVYREMSWSRLYEVFLGASKTTAVVMFLCGAATVTAYMITLADLPNMLADSFSGLLDQPMLFMAVM
MLFLLVVGTAMDLTPTILIFGPVCAPLAVKAGIDPVYFGFMFIYVGCIGLITPPVGTVQNVVAGVGRLRMETVIKGTNPF
LMVYVLLAVLFVIFPQLVTGPLKWMH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 1e-42 41
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 1e-42 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 8e-43 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CtCNB1_3426 YP_003279468.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 5e-43 41