|
Name : CtCNB1_2753 (CtCNB1_2753) Accession : YP_003278795.1 Strain : Comamonas testosteroni CNB-1 Genome accession: NC_013446 Putative virulence/resistance : Virulence Product : capsule polysaccharide export protein kpsS Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3563 EC number : - Position : 3145088 - 3147007 bp Length : 1920 bp Strand : - Note : COG3563, KpsC, capsule polysaccharide export protein DNA sequence : TTGCCTTATGTGGCGCTGGAAGATGGATTTCTGCGTTCCTTCGGCACGGGAGAGCATTTCCCGCCGCTGTCGCTGGTGGT TGATGATGCAGGCATTTATTACGATTGCACGCGACCCAGTGCATTGGAGCAACTGCTGAGCAGCGATGCCGATGTGCTGG CACCGGATGCCGCGCTGGTGCGGCAGGCCCGCGAGAAGCTGCTTTCAGCGGGCCTCAGCAAATACAACCATGCACCGGAT CTGCCCGCAGGCGTGTTGCGCGCCGATGATGTTCAGCGGGTTCTGGTGGTGGACCAGACGGCTGGGGATATGAGTGTGGC CAAGGGTGGGGCGGATGCCGCTACGTTTGGAGCCATGCTGGCGGCAGCGCTGGACGAGAATCCGCAGGCCACTGTCTATG TCAAGACCCACCCCGAAGTGACTTCGGGCCGCAAGGGCGGCTATCTGACGCGTGTGCAGCCCGATGCCCGTACGGTGGTG CTGCGTGATGCGGTCAACCCGATGAGCCTGATTGCTCAGATGGACAAGGTTTATGTGGTCAGCTCAACTATGGGCTTTGA GGCCTTGCTTGCCAGCAAGCCGGTGGTCTGCTTTGGTGTGCCCTGGTACGCGGGCTGGGGTGTGACGGATGATCGCCAGC CGCAGCATGCAGCCATGGGGCGCAGGGCCGGCCGCAGCCGCTCGGTGGACGAGTTGTTTGCCGCCGGTTATATGCACTAC ACCCGATATCTGAATCCTGAAACAAGGCAGCTGGGCTCCATCGCAGATGTGACGGTCTGGCTGGATAGGCAGCGGGAGAT GGCCGAGCGTTACTCGGGTCGGATGATTTGCGTAGGTTTTCCGCGCTGGCGTGCCTGGAATTTTCGGCAGATGCTGTCCT TGCACGCAAAGCGAGTTGTTCACGCGCGCAGCGCGGATGCCGCTGCCGCGCTGAAGCCCGAAAGAGATGACTGTCTGGTC TGCTGGGGCCGTGTTCCGCCCGAAGGAGTGCAGGAACTGGCTGCGGCATCTGGCGTGCGCCTGCTTCGCATGGAGGACGG CTTTGTGCGCTCCGTGGGGCTGGGTTCCGACCTGATCCCGCCGCAGTCCTTTGTGCTGGATGCCCAGGGCATTTATTTCG ATCCGGGCCAGCCTTCGGAGCTGGAGGATCTGCTCAACACCCGGACATTCACGGCGCAGGACCTGGAGCGTGCGCGCAAT GTGCGCGCCTTCATCGTCGAGCACGGCATCACCAAGTACAACCTGGAGCCCAATTGCCCGGTGGACTGGTTCAGCGATGA ACATCCGCAGGCCGGTCGGCAAGTGGTGCTGGTGCCGGGTCAGGTGGAGGACGATGCTTCCATTCGCTTTGGCTGCGATG CCAAAGGTGTTTGCACGAATCTGGGTCTGCTTCAGGCTGCACGCTCTGCATTTCCCGATGCTTTCATTGTCTTCAAGCCG CACCCTGATGTGAGTAGCGGCAATCGCAAGGGGCGTGTAGAGCCGGCTCAGGCTTTGCTCTATGCCGACCACATGGAGCA AGGTGCTTCGGTGGTGAGCTGTATTGAGGCCTGCGATGTGGTGGTGACCATGACTTCGTTGACCGGCTTTGATGCCTTGC TGCGCAACAAGCAAGTGGTGGTGCACGGGCGGCCGTTCTACGCTGGTTGGGGCCTCACGCAGGACTGTCTGCCCGTGCCG CGCCGCAGCCGCTCGCTGTCTCTGGATGAGCTGGTTGCCGGGGCGCTGCTGCACTACCCCTTGTACTGGGATCCGGTGCT CAGAGGCTACACAAGCTGCGAAGCGGTGCTCAGGCGTTTGCTTGAGCAACGTACCGCCCTGGAGCAGTCGGGCAGTTTGC AGGGCCTGAAGTCCGGCTGGTTGAGGCGGCAATGGCGTAAATCGAGGGTATTGCTTCAGTCGATTTTGTCGGATTGGTGA Protein sequence : MPYVALEDGFLRSFGTGEHFPPLSLVVDDAGIYYDCTRPSALEQLLSSDADVLAPDAALVRQAREKLLSAGLSKYNHAPD LPAGVLRADDVQRVLVVDQTAGDMSVAKGGADAATFGAMLAAALDENPQATVYVKTHPEVTSGRKGGYLTRVQPDARTVV LRDAVNPMSLIAQMDKVYVVSSTMGFEALLASKPVVCFGVPWYAGWGVTDDRQPQHAAMGRRAGRSRSVDELFAAGYMHY TRYLNPETRQLGSIADVTVWLDRQREMAERYSGRMICVGFPRWRAWNFRQMLSLHAKRVVHARSADAAAALKPERDDCLV CWGRVPPEGVQELAAASGVRLLRMEDGFVRSVGLGSDLIPPQSFVLDAQGIYFDPGQPSELEDLLNTRTFTAQDLERARN VRAFIVEHGITKYNLEPNCPVDWFSDEHPQAGRQVVLVPGQVEDDASIRFGCDAKGVCTNLGLLQAARSAFPDAFIVFKP HPDVSSGNRKGRVEPAQALLYADHMEQGASVVSCIEACDVVVTMTSLTGFDALLRNKQVVVHGRPFYAGWGLTQDCLPVP RRSRSLSLDELVAGALLHYPLYWDPVLRGYTSCEAVLRRLLEQRTALEQSGSLQGLKSGWLRRQWRKSRVLLQSILSDW |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 2e-116 | 45 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 3e-94 | 45 |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 4e-94 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CtCNB1_2753 | YP_003278795.1 | capsule polysaccharide export protein kpsS | VFG0259 | Protein | 8e-117 | 45 |
| CtCNB1_2753 | YP_003278795.1 | capsule polysaccharide export protein kpsS | VFG0692 | Protein | 9e-105 | 44 |
| CtCNB1_2753 | YP_003278795.1 | capsule polysaccharide export protein kpsS | VFG0704 | Protein | 2e-96 | 43 |
