Gene Information

Name : CtCNB1_2440 (CtCNB1_2440)
Accession : YP_003278482.1
Strain : Comamonas testosteroni CNB-1
Genome accession: NC_013446
Putative virulence/resistance : Unknown
Product : tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 2784725 - 2785726 bp
Length : 1002 bp
Strand : +
Note : COG4974, XerD, Site-specific recombinase XerD

DNA sequence : 
ATGAAAACCAGCACTGCACCGTTACCACCGCTGCGTTCGGTCAAGGTTCTGGAACAGTTGCGTGAGCGCATACGCTGCTT
GTATTACAGCTTACGAACCGAACAGGCGTATGTCCACCGGGTTCGTACCTTCATCCGTTTCCATGGTGTGCGTCACCCGG
CAACCTTGGGCAGCAGCGAAGTCGAGGCATTCCTGTCCTGGCTGGCGAACGAGCGTAAGGTTTCGGCATCCACGCATCGG
CAGGCATTGGCGGCCTTGTTGTTCTTCTACGGCAAGGTGCTATGCGCGGATCTACCTTGGCTTCAGGAGATCGGAAGACC
TCGGCTGTCGCGGCGCTTGCCGGTCGTGCTGACCCCGGAGGAGGTGGTTCGTATCCCCGGTTTTCTGGAAGGGGTGCATC
GTTTGTTCGCCCAGCTTCTGTATGGAACGGGCATGCGGATCAGCGAAGGTTTGCAACTGTGGGTCAAGGATCTGGATTTC
GATCACGGCACGATCATCGTGCGAGAGGGCAAGGGCTCCAAGGATCGGGCATTGATGTTGCCCGAGAGCTTGGCGCCCGG
CCTGCGCGAGCAGCTGGCGCGTGCCCGGGCATGGTGGCTGAAGGACCAGGCCGAGGGCCGCAGCGGCGTTGCGCTTCCCG
ACGCCCTTGAACGGAAGTATCCGCGCGCCGGGCATTCTTGGCCGTGGTTCTGGGTCTTTGCGCAGCACACGCATTCGACC
GACCCACGGAGCGGTGTCGTGCGTCGCCATCATATGTATGACCAGACCTTTCAGCGCGCCTTCAAACGTGCCGTGGATGA
AGCAGGTGTCGCGAAGCCTGCTACACCGCATACCCTGCGCCACTCGTTCGCGGCGGCCTTGCTCCGTAGTGGTTACGACA
TTCGAACCGTGCAGGATCTGCTCGGCCATTCCGACATCTCCACGACGATGATTTACACGCATATGCTGAAAGTTAGCGGT
GCTGGAGTGCGCTCACCGCTTGATGCGCTGCCGCCCTTCTAG

Protein sequence : 
MKTSTAPLPPLRSVKVLEQLRERIRCLYYSLRTEQAYVHRVRTFIRFHGVRHPATLGSSEVEAFLSWLANERKVSASTHR
QALAALLFFYGKVLCADLPWLQEIGRPRLSRRLPVVLTPEEVVRIPGFLEGVHRLFAQLLYGTGMRISEGLQLWVKDLDF
DHGTIIVREGKGSKDRALMLPESLAPGLREQLARARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHST
DPRSGVVRRHHMYDQTFQRAFKRAVDEAGVAKPATPHTLRHSFAAALLRSGYDIRTVQDLLGHSDISTTMIYTHMLKVSG
AGVRSPLDALPPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 4e-108 94
int1 YP_005160012.1 integrase Not tested Not named Protein 4e-116 94
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 1e-141 93
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 2e-141 93
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 8e-142 93
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 1e-141 93
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 2e-141 93
intI YP_001844881.1 integrase Not tested AbaR20 Protein 2e-141 93
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 4e-142 93
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 1e-141 93
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 2e-141 93
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 2e-141 93
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 4e-142 93
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 1e-141 93
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 2e-141 93
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 2e-141 93
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 1e-141 93
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 2e-141 93
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 2e-141 93
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 1e-141 93
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 2e-141 93
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 5e-142 93
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 1e-141 93
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 2e-141 93
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 1e-141 93
intI1 AAK02045.1 integrase Not tested SGI1 Protein 2e-141 93
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 1e-141 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CtCNB1_2440 YP_003278482.1 tyrosine recombinase XerD VFG1028 Protein 4e-142 93