Gene Information

Name : CtCNB1_1136 (CtCNB1_1136)
Accession : YP_003277178.1
Strain : Comamonas testosteroni CNB-1
Genome accession: NC_013446
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1270992 - 1271663 bp
Length : 672 bp
Strand : -
Note : COG0745, OmpR, Response regulators consisting of a CheY-likereceiver domain and a winged-helix DNA-binding domain

DNA sequence :
ATGCGAATTTTGCTGATTGAAGACGAACCCACGCTGCGCGAGCAGCTGCATCAGGCCCTGCTGCAGGCCGGCCACACCGT
GGAGACGGCCGCCGATGGCGAGACGGCGCAATACCTGGGCGAGGTCGAGAGCTTTGACGCTGCGGTGCTGGACCTGGGCC
TGCCCGTGCGCGACGGGCTCAGCGTGCTGCGCGCCTGGCGTGCGCAGGGCCGCTCCATGCCGGTGCTGATCCTCACCGCC
AGAGCCGCCTGGCATGAAAAAGTCGCGGGCATGGATGCCGGAGCCGACGACTATCTGGCCAAACCCTTCCACATGGAAGA
GCTGCTGGCGCGCCTGCGCGCCCTGCTGCGGCGCCTGAGCCCGCATGCCAGCGCACTGTGGCAATGCGGCTCCATCACCC
TGGATTCGCGCCAGGCGCGCGTCACCGTCGAAGGTCAGGCGCTGACGCTGACCAGCCATGAATTCAAGGTGCTGGCCCTG
CTGATGCAGCGCATGGGCGCCGTGGTCTCACGCACCGAGCTGTCCGAGCATATCTATCCGCAGGACAGCGACCGCGACTC
CAACACCATCGAAGTCTTTGTCGGGCGCCTGCGGAAAAAACTACCCCCCGGCTCGATCGAAACCGTGCGCGGCCTGGGCT
ATCGCCTGGCCGCGCCATCCAACCAAGAATAA

Protein sequence :
MRILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGLPVRDGLSVLRAWRAQGRSMPVLILTA
RAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLSPHASALWQCGSITLDSRQARVTVEGQALTLTSHEFKVLAL
LMQRMGAVVSRTELSEHIYPQDSDRDSNTIEVFVGRLRKKLPPGSIETVRGLGYRLAAPSNQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CtCNB1_1136 YP_003277178.1 two component transcriptional regulator NC_002516.2.879194.p Protein 7e-41 47
CtCNB1_1136 YP_003277178.1 two component transcriptional regulator CP000647.1.gene1136. Protein 6e-38 46
CtCNB1_1136 YP_003277178.1 two component transcriptional regulator BAC0530 Protein 5e-38 46
CtCNB1_1136 YP_003277178.1 two component transcriptional regulator CP001918.1.gene2526. Protein 3e-37 44
CtCNB1_1136 YP_003277178.1 two component transcriptional regulator CP004022.1.gene1005. Protein 8e-39 43
CtCNB1_1136 YP_003277178.1 two component transcriptional regulator CP000034.1.gene2022. Protein 2e-37 43
CtCNB1_1136 YP_003277178.1 two component transcriptional regulator CP001138.1.gene1939. Protein 4e-38 43
CtCNB1_1136 YP_003277178.1 two component transcriptional regulator NC_002695.1.913289.p Protein 4e-36 42
CtCNB1_1136 YP_003277178.1 two component transcriptional regulator BAC0487 Protein 3e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CtCNB1_1136 YP_003277178.1 two component transcriptional regulator VFG1390 Protein 1e-23 43
CtCNB1_1136 YP_003277178.1 two component transcriptional regulator VFG0475 Protein 4e-38 43
CtCNB1_1136 YP_003277178.1 two component transcriptional regulator VFG0596 Protein 1e-25 41
CtCNB1_1136 YP_003277178.1 two component transcriptional regulator VFG0473 Protein 8e-28 41
CtCNB1_1136 YP_003277178.1 two component transcriptional regulator VFG1389 Protein 3e-23 41