Gene Information

Name : Gbro_4701 (Gbro_4701)
Accession : YP_003275716.1
Strain : Gordonia bronchialis DSM 43247
Genome accession: NC_013441
Putative virulence/resistance : Unknown
Product : integrase catalytic domain-containing protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 5032674 - 5033603 bp
Length : 930 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: aav:Aave_2937 integrase catalytic subunit

DNA sequence : 
TTGATCGTCGAGTACATCGACGATCACAGGGACAGGTTCGGGGTCGATCCGATCTGCCGGGTACTCACCGAGTACGGAAT
GCAGATTGCCCCATCCACCTACTATGCCCACAAGCAGCGTGGCCTGGTCTCGGCAGCGATGCTCGAGGAGGCCTACGCCG
CTCATGCCGTCTACCAGCAGTTCGAGAAGAACCGCGGTGTGTACGGGGTGCGCAAGATGTATCACACGATGTGGCGCGCC
GGTCACGTGATGGGTCGTGATCAGGTCGGCCGGCTGATGGGGATCTGCGGCATCTCCGGTGCTGTACGCGGCAGCCATCG
CACCACCACGACCCACCGAGACGATAGGGCGCCACGATTCCCTGATCATGTTGAACGACAATGGGATACACCGACACATC
CGGATCAGTGGTGGGTGGCCGACTTCACGTATGTGTGGACATTGGCGGGGTTTGTCTACGTCGCGTTCCTCGTGGATGTG
TTTTCGCGACGCATCCTCGGGTGGCGAGTCATGGCGAGCAAGCACACACCGTTGGTGACGAGTGTTGTCGAGCAAGCGTT
GTTCGCCCGCCGCCGATCCGGATTCGACTTCACCGCAACCGGTTTGGTTCATCACAGCGATGCGGGCAGTCAGTACACAT
CGTTGGCATTCACCGCTGCGCTGACCGAGGCCAACATCACCGGATCCATAGGATCGGTCGGCGATGCGCTCGACAACGCG
CTCATGGAGTCGGCGATCGGCTTGTACAAGACCGAACTGATCGACACCGGCCGCGCCTGGAAGGACCGCGGCGAGGTCGA
ACGAGAGACCGCCGCCTACGTGCACTGGTTCAACGCCGAGAGGCTGCACTCCTCCCTGGGCTACTGCTCACCCGTCGAGT
ACGAGACGCGCTATCGTGACAGCGTCGCCTCCGTGGCGGAGGTGGCCTGA

Protein sequence : 
MIVEYIDDHRDRFGVDPICRVLTEYGMQIAPSTYYAHKQRGLVSAAMLEEAYAAHAVYQQFEKNRGVYGVRKMYHTMWRA
GHVMGRDQVGRLMGICGISGAVRGSHRTTTTHRDDRAPRFPDHVERQWDTPTHPDQWWVADFTYVWTLAGFVYVAFLVDV
FSRRILGWRVMASKHTPLVTSVVEQALFARRRSGFDFTATGLVHHSDAGSQYTSLAFTAALTEANITGSIGSVGDALDNA
LMESAIGLYKTELIDTGRAWKDRGEVERETAAYVHWFNAERLHSSLGYCSPVEYETRYRDSVASVAEVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 8e-35 48
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-35 48
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 8e-39 48
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-42 43
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-42 43
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 7e-43 43
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 7e-43 43
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-42 43
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 4e-42 43
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 6e-42 43
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 3e-42 43
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-42 43
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-42 43
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-42 43
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 7e-41 43
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-28 42
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-41 42
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-40 42
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-40 42
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-40 42
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 1e-40 42
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-43 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gbro_4701 YP_003275716.1 integrase catalytic domain-containing protein VFG1602 Protein 6e-42 42