Gene Information

Name : Gbro_4042 (Gbro_4042)
Accession : YP_003275102.1
Strain : Gordonia bronchialis DSM 43247
Genome accession: NC_013441
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 4341099 - 4341872 bp
Length : 774 bp
Strand : +
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dze:Dd1591_1324 ABC transporter

DNA sequence : 
ATGAGCCGCCTCGTCGCCGAGGGCCTGTCCGTCGGATACGACGATCGGATCGTCATCGCCGACCTCGATCTCGCCATTCC
CGACCATCAGATCACGACCCTCATCGGCCCCAACGGATGCGGAAAGTCCACGCTGCTGCGCTGTTTGGCCAGATTGCTGC
CGCCCCGCGCGGGCACCGTCCTTCTCGACGGCGTCGACATCAATCACGAGAAGCCCAAGAAGGTGGCGCGCACGCTGGCG
ATCCTGCCCCAGAACCCGGTTGCCCCAGACGGTTTGACGGTCACCGATCTGGTTCGACGCGGCCGGCATCCGCATCAGCG
GTGGTATCAGCAGGCCTCCGACGCCGACGAGGCCGCCGTTCGCGAGGCGATGGAGCTGACCAACACCCTCGATCTCGCCG
ACCGTACGCTCGATGCACTCTCCGGCGGTCAGCGGCAGCGCGTGTGGATCGCACTCACCCTGGCCCAGGGCACCGACCTT
CTGCTCCTCGACGAGCCGACGACCTATCTGGACCTCGCCCATTCAGTCGACATCCTCGATCTCGTAGCCCGGCTCAAACG
CGAACACGGCAAGACCGTCGTCATGGTGCTCCATGATCTGAATCTCGCTGCGCGCTACTCGGATTCGCTGATGGTGATGA
AGAACGGGACGATCGTCACCCAGGGCGACCCGACCGACATCATCGACGCCGGTCTCTTGTCGGACGCCTTCGGCCTGCGC
GCACATGTGATGACGGACCCGGTCTCGGGTGGACCGTTGATCGTGCCGCTGTAG

Protein sequence : 
MSRLVAEGLSVGYDDRIVIADLDLAIPDHQITTLIGPNGCGKSTLLRCLARLLPPRAGTVLLDGVDINHEKPKKVARTLA
ILPQNPVAPDGLTVTDLVRRGRHPHQRWYQQASDADEAAVREAMELTNTLDLADRTLDALSGGQRQRVWIALTLAQGTDL
LLLDEPTTYLDLAHSVDILDLVARLKREHGKTVVMVLHDLNLAARYSDSLMVMKNGTIVTQGDPTDIIDAGLLSDAFGLR
AHVMTDPVSGGPLIVPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-54 58
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-39 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-37 48
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 5e-47 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 5e-47 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-42 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-42 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-42 46
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-42 46
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-37 44
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-37 44
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-37 44
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-37 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gbro_4042 YP_003275102.1 ABC transporter-like protein BAC0164 Protein 4e-39 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gbro_4042 YP_003275102.1 ABC transporter-like protein VFG0925 Protein 8e-47 51
Gbro_4042 YP_003275102.1 ABC transporter-like protein VFG1042 Protein 4e-39 49