|
Name : Gbro_0127 (Gbro_0127) Accession : YP_003271369.1 Strain : Gordonia bronchialis DSM 43247 Genome accession: NC_013441 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 142798 - 146214 bp Length : 3417 bp Strand : + Note : KEGG: sml:Smlt2232 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); protein of unknown function DUF472; protein of unknown function DUF471; protein of unknown function DUF470; nucleic acid binding OB-fold DNA sequence : ATGGCTCTCGACACCCCTTCGTCGGACCTCCCGGTCAGCACCGACGACACTGCTGAGCACCAGCCCACCCCAGCGCACCG TCCGCCGTCGGCGGCCGATCGCCGATCCGTCGACCTGCTCGAAAAGATCAGGCGGCCCAGAGGATTCGGGGCCGGCGCAC CCAAGATCGCGGGCACTGTGGTCGGCGTGCTGGCCGGCATCGCGCTGTTGTCGAGCATCTTCCCGCTGTTCCGCCGGCTG ATCCACTACCCGCGCGACTTCATCGACAACTACATCGTCTCGCTGCCCAACACGAGTCTGGCGTGGGCCTTCGTGCTGGC GCTGGTCGCGATCGCACTGTCGTCACGCAAACGCATCGCGTGGTGGATCGCGACGATCTACCTGGTGCTGTTCATGGTGA GCAATGCGCTGCTGCTCGTCGATCCGGTGGCCACCGACTTCGGCGTCGACACCGACGAACGCATCCAGATCTGGATCGGA CTGGGAATCGATGCGGCCGCACTCATCTTCCTGATCGTCACCTACCGGCAGTTCTACACACGTGTCCGCCGCGGCGCCCT CTTCCGGGCCCTCGGTGTGCTCATCGTCGGACTCACCGCCGCCACCCTCGTCGGATGGGGTCTGGTGTGGGCGTGGCCGG GGAGTCTGGAGCGGACCGAACGCCTGCCGTACGCGTTCAACCGGGTGGTCACCTTCGGCAGCATCGACAGCCGAACCTTC GACGGTCACCACACCCACATCGTCATCGACAGTGCACTGGGGCTGCTCGGGGCGCTGGCCCTTATCGCCGCGGCGACGGT GCTGTTCCGCTCACAGCGACTGGAATCGTTGATGACCAGCGACGACGAGAAGCTGATCCGCGCACTGATCACCCGATTCA ACGACGACGATTCGCTGGCCTACTTCTCCACCCGCCGCGACAAGGCGGTGGTGTTCTCACCCGACGGCCGGGCCGCGATC ACCTACCGCGTGGAGATCGGCGTCGGACTGGCCGGCGGCGACCCGATCGGAGATCCGGAATCCTGGCCCGACGCCATCGC CGAGTTCCTCACGTTGTGCGATCGGTATGGCTGGCATCCGGCGGCGATGGGGTCGAGTGCGCGGGGCGCGGCCGCCTACG ATGCGGCCGGATTCGGCTCGCTCTCCATCGGCGACGAAGCCATCCTGCACACCCGCGAGTACACGATCAGCGGACCCGCG ATGAAGGCGGTGCGGCAGGCCGTGACGCGCACCCGCCGCGCCGGGGTGACGGTGCGGATTCGACGGCACGGCGAGGTGCC CGACGATGAGATGCCACAGGTCATCGCCCGGGCCGATGCGTGGCGGGACACCGACGAGGAACGCGGCTTCGCGATGGCGC TCTCGCGGCTCGGTGACCGTGCCGACGACGACTGCCTGCTGGTGGAGGCCGTCGAACATGCGGGCACCCCCGAGGAGAAG GTGATCGGGATGCTCTCGTTTGTGCCGTGGGGCCGACGAGGTGTCTCGCTGGATGTGATGCGACGCGATCGTGGCAGCGT GAACGGCGTCGTCGAGACGATGGTCACCGAATTGTGCCGCAACTCCGAGCAATTCGGTATCACCGAGATCTCGCTGAACT TCGCCACCTTCCGCGCCTTCTTCGAGCAGGGCCCGCAGATCGGGGCCGGGCCCATCATGCGGCTCGGCTACTCGGTGCTC ATGTTCGGCTCACGGTTCTTCCAGATGGAGTCGCTGTACAAGTCGAACGCCAAATATCTGCCGGACTGGCAGCCCCGGTT CCTGTGCTTCGAGGACAACCGAATCCTGCCGCGCGTCGGGCTGGCCGCCATCGTCACCGAGGGCTTCGTGCAGCTGCCGA GGTTCGGGCGCAAGCAGCATTACATCGCAGGTCAGTCGTCGATTCCGGCCGGAGTCGACGCCGACGCATTGATCGCGCAG CTGGAGTCCGAGGAGGACCGCACGGCCGTCGAGGTGCACCGGCCTGAGCAGGTACGGGTGCGCGTCGCCAAGCTCGACCG GCTGATCGAGGAGGGCTTCGACCCGTACCCGCCCGCCGATGCGCCGACACACACGATTGCCGAGGCGATCGCCGAGCCGG AGGGCACGCAGGTCACCATCGCCGGACGGGTCACCAAGATGCGCGACTTCGGCAAGGTCACCTTCGCCGATGTGCACGAC TGGTCCGGGCAGATACAGATGCTCGTCGAGGCGTCGCGGGTTATCCCGGGCACCCCCGACTTCGGATCCGACGTCGACCT CGGCGACCTCGTCGAGGCACGTGGGGTGATCGGGCGGAGCCGGTCCGGGGAACTGTCGGTGCTGATCGATGCGTGGCGCT TCAACGGCAAATGCCTGCGGCCGCTGCCCGATAAGTGGTCCGGACTCACAGACCCGGAAGCCCGTGTGCGGCAACGCTAT GTGGACCTTGCGATCAACCCGCGCAGCCGTGAGCTGCTGGCCACCCGGAGTGTGGTGGTCAAGGCGCTGCGGGATTTCCT CGCCGACCGCGGATTCATGGAGGTCGAGACGCCCATCCTGCAGCAGATTCACGGCGGGGCGAATGCCACCCCGTTCCAGA CCCACATCAACGCCTACAACCTGGATCTGTATCTGCGGATCGCGCCGGAGTTGTATCTCAAGCGGCTGTGTGTCGGCGGC GTCGAGAAGGTGTTCGAGATCGGTCGCAACTTCCGCAACGAGGGTGTCGACTTCAGTCACAACCCCGAGTTCACCAGCCT GGAAGCCTATGCGGCACACAGCGATTACCTGAAGATGCTGGACCTGACGCGGGAAATGATCCAGCACGCAGCGACTGCCG CGCACGGCGAGCCGGTGATCATCCGCGTCGACGACGAGGGCAACGAGCAGCGCGTCGACATCTCCGGTGACTGGCCGGTC CGGACCGTGCACGAGGTGGTGTCGGAAGGCGCCGGTGTCGAGATCACATCGGACACAGAGGTTTCCGAGCTTCGCGGCAT TTGCGATCGTCTGGAGATCGCCTACCGGCCGGACTGGGATGCCGGGCAGATCGTGCTGGAACTCTACGAGCATCTCGGCG AGGATCGCACCACCGTCCCGACGTTCTACACCGATTTCCCCACGTCGACGTCGCCGCTGACCCGGGCGCACCGCAGCAAA CCCGGCGTGGCCGAGCGCTGGGATCTGGTGGCCTGGGGGGTGGAACTCGGTACCGCGTACACCGAGCTGACCGATCCGGT CGAGCAACGCAAACGGCTGACCGCACAGTCGATCCTGGCCGCCGACGGTGATCCGGAGGCGATGGAGTTGGACGAGGACT TCCTCACCGCCCTCGAGTATGCGATGCCGCCCACCGGTGGTCTCGGCGTCGGGGTGGATCGGGTGGTCATGCTCATCACC GGGCAGTCGATTCGTGAGTCGCTGGCGTTTCCGATGGTCAAGCCGACGGACGCGTGA Protein sequence : MALDTPSSDLPVSTDDTAEHQPTPAHRPPSAADRRSVDLLEKIRRPRGFGAGAPKIAGTVVGVLAGIALLSSIFPLFRRL IHYPRDFIDNYIVSLPNTSLAWAFVLALVAIALSSRKRIAWWIATIYLVLFMVSNALLLVDPVATDFGVDTDERIQIWIG LGIDAAALIFLIVTYRQFYTRVRRGALFRALGVLIVGLTAATLVGWGLVWAWPGSLERTERLPYAFNRVVTFGSIDSRTF DGHHTHIVIDSALGLLGALALIAAATVLFRSQRLESLMTSDDEKLIRALITRFNDDDSLAYFSTRRDKAVVFSPDGRAAI TYRVEIGVGLAGGDPIGDPESWPDAIAEFLTLCDRYGWHPAAMGSSARGAAAYDAAGFGSLSIGDEAILHTREYTISGPA MKAVRQAVTRTRRAGVTVRIRRHGEVPDDEMPQVIARADAWRDTDEERGFAMALSRLGDRADDDCLLVEAVEHAGTPEEK VIGMLSFVPWGRRGVSLDVMRRDRGSVNGVVETMVTELCRNSEQFGITEISLNFATFRAFFEQGPQIGAGPIMRLGYSVL MFGSRFFQMESLYKSNAKYLPDWQPRFLCFEDNRILPRVGLAAIVTEGFVQLPRFGRKQHYIAGQSSIPAGVDADALIAQ LESEEDRTAVEVHRPEQVRVRVAKLDRLIEEGFDPYPPADAPTHTIAEAIAEPEGTQVTIAGRVTKMRDFGKVTFADVHD WSGQIQMLVEASRVIPGTPDFGSDVDLGDLVEARGVIGRSRSGELSVLIDAWRFNGKCLRPLPDKWSGLTDPEARVRQRY VDLAINPRSRELLATRSVVVKALRDFLADRGFMEVETPILQQIHGGANATPFQTHINAYNLDLYLRIAPELYLKRLCVGG VEKVFEIGRNFRNEGVDFSHNPEFTSLEAYAAHSDYLKMLDLTREMIQHAATAAHGEPVIIRVDDEGNEQRVDISGDWPV RTVHEVVSEGAGVEITSDTEVSELRGICDRLEIAYRPDWDAGQIVLELYEHLGEDRTTVPTFYTDFPTSTSPLTRAHRSK PGVAERWDLVAWGVELGTAYTELTDPVEQRKRLTAQSILAADGDPEAMELDEDFLTALEYAMPPTGGLGVGVDRVVMLIT GQSIRESLAFPMVKPTDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 1e-154 | 43 |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 5e-155 | 43 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 5e-155 | 43 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 5e-155 | 43 |
