|
Name : Hoch_0082 (Hoch_0082) Accession : YP_003264616.1 Strain : Haliangium ochraceum DSM 14365 Genome accession: NC_013440 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 129283 - 131265 bp Length : 1983 bp Strand : + Note : PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: ank:AnaeK_4411 poly DNA sequence : ATGAGCGGCATCGGCTCGACTCCTGGGCGCGCGCGTCTGCCGGCCCGGAGCGGGGTCGCCGGCGCGGTCGGCAACCGGCG TCAGGCGCGCGCGGCCGCCGTCATCCTCGACATCTTCATCATCGGCTTCAGCACCATGGCCGCGTACGCGATCCGCTTCG GCTTCGTGGGCATGGTCCAGGCCAAGTACCTGTACCAGATGATGATGCTGGTGCCGACGCTGATCGCCGCGCGCCTGCTG CTCAACGCCGCGCTGGGCGTGTACCGCATGATGTGGCGCTACGTCGGCCTGCGCGAGGCGCTGCGCTTCATGCGCTCGGC GGCCGTGGGCAGCGCGCTGGTGAGCGTGGTGCTGCTGTTCCTGCGCTACGCCACCTCGGAGCGCTACGAGTTCTTGCAGG TGCCCATCGGCATCATCATCCTCGAGGGCACATTCACCTTCGGCGCCATCATGGGCAGCCGCTTCTTGCCGCGGATTTTG GCCGAGCGTACGAATTCGACCGGCGACGGCGCGCAGCCGACGCTGCTGGTGGGCGCCGGCCGCGGCGGGCTGGCGATCGC GCGCGAGGCCGCGCTCAACCCCGCGCTCGGCTTCGAGGCGCGCGGCTTCATCGACGACGACCCGTCCAAGCACGGCCGCG AAGTGCACGGTTTGCGCGTCTACGGCGGTCTGGACGCGCTCGAGGACGCGATCCACGAGCTCGCCGTCAGCGCCGTGATC GTCACCACCTCGGCCATCGCGCCGGCCCAGCTCCTGCGCATCGTCGACACCGCGCGCGCGCTCGGCATCCAGGTGCGGAC GGTGTCGCGCGCCTTCGAGCTGCTCGACCATCGCGTCGACGCCGACACCCTGCGCGAGGTGCGCATCGAGGATCTGCTCA GCCGCGATCCGGTGCCGCCGTCGCTGTCGATGGACGATCTGGTCGGCGCCTACGGCGGCAAGCGCATTCTGGTCACCGGC GCGGGCGGCTCCATCGGCAGCGAGCTGTGCCGCCAGCTCGCGCGCATGGGGCCGGCCCAGCTCCTGCTGGTCGAGCGCGA CGAGACCAACCTCTTCGAGATCGAGCGCGAGCTGAGCAGCGATGTCGCCCGATCGGACGAAAACGCTACCAGCAGCGGCG CGGAGCCCGCGGGTGACGCGCTCTGGGTGCCGATCCTGGCCGACATCTGCGACGCCAAGGCGATGAACGAGGTGTTCGCG CGCCATCGCCCCGAGGTGGTGTTTCACGCCGCGGCCTACAAGCACGTGCCGATGATGGAGCGCTTTCCCCACGAGGCCGT GCGCAACAACGTGTTCGGCACCCTGCGCCTGGCCGAGATGGCCGACCAGCACGGCGTGGACAGCTTCGTGATGATCTCGA CCGACAAGGCCGTGCGCCCGAGCAGCGTGATGGGGGCGAGCAAGCGCCTGGCCGAGATGGTGGTGCAGCAGCTCGCCGCG CGCAGCCGCACCAGCTTCTCGTGCGTGCGCTTTGGCAACGTGCTCGGCAGCCGCGGCAGCGTGGTGAGCATCTTCCGCGC GCAGATCCAGCAGGGCGGCCCGGTCACGGTCACGCACCCGGACGCCGTGCGCTACTTCATGACCGTGGGCGAGGCCGCGC ATCTGGTGATCCAGGCCGGCACCCTGGGCAGCCGCGGCGAGGTGTATCTGCTCGACATGGGCGAGCCGGTGAAGATCCTC GAGCTGGCGCGGCAGATGATCTCGCTGAGCGGCGCCACCGAGGCGTCGATCGCGATCGAGATCATCGGCACGCGACCGGG CGAGAAGCTGTTCGAGGAGCTCAAGACCGACTCGGAGGAGCTCGAGCAGACGCCGCTGCGCAAGGTCTATCGCTGCTCGC TGGGGGCGATCGACGAGCCCGCGCTGCGCGCGACCCTCGAGCGCCTCACCTTCCTCGTGCGCGCCAAGGACGGCGACGGC GTGCGCGACTGTCTGGCCGCGCTGGACATCGATTACCGGCGCCCGCCGGCGGCCATGGTGTAG Protein sequence : MSGIGSTPGRARLPARSGVAGAVGNRRQARAAAVILDIFIIGFSTMAAYAIRFGFVGMVQAKYLYQMMMLVPTLIAARLL LNAALGVYRMMWRYVGLREALRFMRSAAVGSALVSVVLLFLRYATSERYEFLQVPIGIIILEGTFTFGAIMGSRFLPRIL AERTNSTGDGAQPTLLVGAGRGGLAIAREAALNPALGFEARGFIDDDPSKHGREVHGLRVYGGLDALEDAIHELAVSAVI VTTSAIAPAQLLRIVDTARALGIQVRTVSRAFELLDHRVDADTLREVRIEDLLSRDPVPPSLSMDDLVGAYGGKRILVTG AGGSIGSELCRQLARMGPAQLLLVERDETNLFEIERELSSDVARSDENATSSGAEPAGDALWVPILADICDAKAMNEVFA RHRPEVVFHAAAYKHVPMMERFPHEAVRNNVFGTLRLAEMADQHGVDSFVMISTDKAVRPSSVMGASKRLAEMVVQQLAA RSRTSFSCVRFGNVLGSRGSVVSIFRAQIQQGGPVTVTHPDAVRYFMTVGEAAHLVIQAGTLGSRGEVYLLDMGEPVKIL ELARQMISLSGATEASIAIEIIGTRPGEKLFEELKTDSEELEQTPLRKVYRCSLGAIDEPALRATLERLTFLVRAKDGDG VRDCLAALDIDYRRPPAAMV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 1e-79 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Hoch_0082 | YP_003264616.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 5e-77 | 42 |
