Gene Information

Name : Hoch_6488 (Hoch_6488)
Accession : YP_003270850.1
Strain : Haliangium ochraceum DSM 14365
Genome accession: NC_013440
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 8911018 - 8911758 bp
Length : 741 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: acp:A2cp1_3559 ABC transporter

DNA sequence :
ATGCCTGAGTCCGGACCGGTGTCCGAGACTGAGCCCGGGACCGAGTCCGCGGCTGCGACGCCGGTTCTGGCGCTCAGCGA
GGTGGTCAAGGACTACGGCGACGAGGTCGTCACCCGGGTGCTGCGCGGCGTCGATTTCGAGCTCGGCGCCGGCGAGTTCA
CGGCCCTGGTCGGCCCCTCGGGCTCGGGTAAGAGCACGCTGCTCAACATCCTCGGCCTGCTCGACACGCCCACGGCCGGT
TCCGTGCGCGTGCTCGGCACCGAGATCGCCGGGCTCGACGACGCCGCGCTCACCGAGCTGCGCGGCCGCCGCATCGGCTT
CGTGTTCCAGTTTCATCACCTGGTGCCCTCGCTCACGGCCGCCGAGAACGTGGCCATGCCGCTGGCCATCGCCGCCGGCC
GCATGCGCCGCGATCTGCGCGCGCGCGCCGCCGAGGTGCTGGCCGAGGTCGGTCTAGCCGGGCGCGAAGACGCCAAGCCG
GCCCAGCTCTCGGGCGGCCAGCAGCAGCGCGTGGCCATCGCCCGCGCCCTGATCGCGCGGCCGCCCCTGATCCTGGCCGA
CGAGCCCACCGGCAACCTCGACACCCGGACCGCGGACGAGGTCTTCGCGCTCATGCGCCGCTTCAACCGCGAGGCCGAGA
TCGCGTTCTTGATCGTCACCCACGATCCGCGCCTGGCCGAGCGCTGCGACCGCGTCATCGAGCTGGTCGACGGCCGCATC
GCCAGCGACACCGGCCGCTGA

Protein sequence :
MPESGPVSETEPGTESAAATPVLALSEVVKDYGDEVVTRVLRGVDFELGAGEFTALVGPSGSGKSTLLNILGLLDTPTAG
SVRVLGTEIAGLDDAALTELRGRRIGFVFQFHHLVPSLTAAENVAMPLAIAAGRMRRDLRARAAEVLAEVGLAGREDAKP
AQLSGGQQQRVAIARALIARPPLILADEPTGNLDTRTADEVFALMRRFNREAEIAFLIVTHDPRLAERCDRVIELVDGRI
ASDTGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-30 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-31 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-31 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-31 43
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 8e-15 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hoch_6488 YP_003270850.1 ABC transporter NC_008702.1.4606598. Protein 9e-35 48
Hoch_6488 YP_003270850.1 ABC transporter CP001581.1.gene798.p Protein 4e-39 45
Hoch_6488 YP_003270850.1 ABC transporter NC_012469.1.7686878. Protein 1e-40 45
Hoch_6488 YP_003270850.1 ABC transporter NC_012469.1.7685735. Protein 4e-34 44
Hoch_6488 YP_003270850.1 ABC transporter CP001581.1.gene598.p Protein 6e-39 41