Gene Information

Name : Hoch_5954 (Hoch_5954)
Accession : YP_003270322.1
Strain : Haliangium ochraceum DSM 14365
Genome accession: NC_013440
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 8154101 - 8154757 bp
Length : 657 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: avi:Avi_0712 cell surface polysaccharide export ABC-2 transporter ATP-binding protein

DNA sequence : 
ATGATCGAACTCCGCGACGTTTGTAAATCCTACGAAACGGCAGCCGGTCCCAACTGCGTGCTCGACCACGTGAGCATCCG
CTTCCCCGCCAAGACCAGCGTCGGCATCCTCGGCTACAACGGCGCCGGCAAGTCGACCTTGCTGCGCGTCATCGGCGGCG
CCGAGCTGCCCGACTGCGGCCAGATCATCCGCCGTGGCAACGTGTCGTGGCCCATCGGCTTCGCCGGCGGCTTCAACAGC
TCGCTCACCGGTGAGGAGAACTGCCGCTTCGTGGCCCGCATCTACGGCCAGGATATCGACCGCGTGGTCGACGACGCCCA
GGCCTTCGCCGAGATCGGCAACTACTTCACCATGCCGGTGCGCACCTACTCGTCGGGTATGCGCGCGCGCCTGGCCTTCG
GGCTGAGCATGGCCATCGACTTCGACGTCTACCTGGTCGACGAGGTCACCGCCGTCGGCGACAAGCGCTTCCAGGAGAAG
TGCCGCGACGCCTTCGACGAGCGCCGCGAGCGCTCCTCGGTGATCATCGTGTCGCACCAGACGCGGACGCTCAAAGAGTA
CTGTCAGCAGTTCGCCGTGCTGCGCGACGGGCGCCTGGCGCTGTTCGACGATCTCGGCGAAGCGGCCGAGTACTACGAGG
GGAAGATGGCAGCATGA

Protein sequence : 
MIELRDVCKSYETAAGPNCVLDHVSIRFPAKTSVGILGYNGAGKSTLLRVIGGAELPDCGQIIRRGNVSWPIGFAGGFNS
SLTGEENCRFVARIYGQDIDRVVDDAQAFAEIGNYFTMPVRTYSSGMRARLAFGLSMAIDFDVYLVDEVTAVGDKRFQEK
CRDAFDERRERSSVIIVSHQTRTLKEYCQQFAVLRDGRLALFDDLGEAAEYYEGKMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 1e-51 52
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 1e-51 50
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 2e-47 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hoch_5954 YP_003270322.1 ABC transporter VFG1449 Protein 5e-52 50
Hoch_5954 YP_003270322.1 ABC transporter VFG0258 Protein 6e-48 49
Hoch_5954 YP_003270322.1 ABC transporter VFG2563 Protein 2e-45 48
Hoch_5954 YP_003270322.1 ABC transporter VFG0696 Protein 8e-49 47