Gene Information

Name : Hoch_0552 (Hoch_0552)
Accession : YP_003265083.1
Strain : Haliangium ochraceum DSM 14365
Genome accession: NC_013440
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 744882 - 745562 bp
Length : 681 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: mxa:MXAN_1349 DNA-binding response regulator

DNA sequence :
ATGAGCCAGCACAAGATCCTGATCGTCGAAGACGATGAAGCCATCGCCGCGGGCCTGGCCCTCAATCTCAAGATCGCCGG
CTACCAGACCACGGTGGTCCACGACGGCCTGGAGGCGCTCAAACGGCTCGAGGAGTCGTCGCCGCACCTGATCTTGCTCG
ATATCAATCTGCCCAGCGAGAACGGAATCGGCGTGCTCGGGACGCTGCGCCAGAGCGGCAACCAGGTGCCCGTGATCATC
CTGTCGGCGCGCGACGACGAGTACGACAAGGTCGCCGCCCTGCGGCTCGGCGCCGACGACTACATCACCAAGCCCTTCGG
CCTGGCCGAGCTCATGGCCCGGGTGGCCGCGGTGCTGCGTCGCGTGGGCACGCAGGAGATCAGCGCGCTGCACCGCTTCG
GCAGCGTCGAGGTCGAGCTCGAGACCCGCAGCGTGGTCCGCCAGGGCGAGGCCATCAAGCTCACGCACCTCGAGTTCGAG
CTGCTGGCCTTCCTGGTCAAGAACCCGTCGCGCGTGTTCTCGCGCGAGGAGCTGCTGCGCCAGGTGTGGAAGCAGTCCTC
GGGCACGCTGCGCACAGTCGATAACTTCGTCGCCCAGCTCCGCAGCAAGCTCGAGAGCGACCCGGAAAATCCGCGCTTTT
TCATCACCGTGCGCGGCAGCGGCTACCGCTTCGATAGCTGA

Protein sequence :
MSQHKILIVEDDEAIAAGLALNLKIAGYQTTVVHDGLEALKRLEESSPHLILLDINLPSENGIGVLGTLRQSGNQVPVII
LSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAVLRRVGTQEISALHRFGSVEVELETRSVVRQGEAIKLTHLEFE
LLAFLVKNPSRVFSREELLRQVWKQSSGTLRTVDNFVAQLRSKLESDPENPRFFITVRGSGYRFDS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hoch_0552 YP_003265083.1 transcriptional regulator AE000516.2.gene3505. Protein 6e-37 44
Hoch_0552 YP_003265083.1 transcriptional regulator NC_002952.2859905.p0 Protein 1e-41 43
Hoch_0552 YP_003265083.1 transcriptional regulator NC_007622.3794472.p0 Protein 1e-41 43
Hoch_0552 YP_003265083.1 transcriptional regulator NC_002745.1124361.p0 Protein 2e-41 43
Hoch_0552 YP_003265083.1 transcriptional regulator NC_009782.5559369.p0 Protein 2e-41 43
Hoch_0552 YP_003265083.1 transcriptional regulator NC_002951.3237708.p0 Protein 2e-41 43
Hoch_0552 YP_003265083.1 transcriptional regulator NC_002758.1121668.p0 Protein 2e-41 43
Hoch_0552 YP_003265083.1 transcriptional regulator NC_009641.5332272.p0 Protein 2e-41 43
Hoch_0552 YP_003265083.1 transcriptional regulator NC_013450.8614421.p0 Protein 2e-41 43
Hoch_0552 YP_003265083.1 transcriptional regulator NC_007793.3914279.p0 Protein 2e-41 43
Hoch_0552 YP_003265083.1 transcriptional regulator NC_009085.4919120.p0 Protein 3e-29 43
Hoch_0552 YP_003265083.1 transcriptional regulator NC_012469.1.7686381. Protein 3e-35 42
Hoch_0552 YP_003265083.1 transcriptional regulator NC_003923.1003749.p0 Protein 3e-41 42
Hoch_0552 YP_003265083.1 transcriptional regulator NC_012469.1.7685629. Protein 2e-35 42
Hoch_0552 YP_003265083.1 transcriptional regulator HE999704.1.gene1528. Protein 2e-26 41
Hoch_0552 YP_003265083.1 transcriptional regulator NC_010410.6002907.p0 Protein 1e-30 41
Hoch_0552 YP_003265083.1 transcriptional regulator NC_011586.7046392.p0 Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hoch_0552 YP_003265083.1 transcriptional regulator VFG1389 Protein 2e-33 43
Hoch_0552 YP_003265083.1 transcriptional regulator VFG1563 Protein 7e-31 41