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Name : Hoch_4828 (Hoch_4828) Accession : YP_003269211.1 Strain : Haliangium ochraceum DSM 14365 Genome accession: NC_013440 Putative virulence/resistance : Virulence Product : type IV-A pilus assembly ATPase PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 6607927 - 6609618 bp Length : 1692 bp Strand : - Note : TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: mxa:MXAN_5788 type IV-A pilus assembly ATPase PilB DNA sequence : ATGAGCCGAATTGGCGAACTCCTCGTTCGTGAGAAAATGATCACGTCCGATCAGCTAAGGGAGGCGCAGAGTGAAGCCCA GCGCAGTGGTCTGCGACTGGGTTCTGCGTTGGCGAATCTCGGGATAGTCGACGACGACCAGCTATCGAAGTTCGTCGCCA GTCAATACGGCCTGAAGACAGTCAATCTCAACAGCTACACGCTCGATCCAGAGCTGTTGAAATTGATCCCCAAGGACGTT GCCCAGCGCCACCAGGTGGTGCCGCTGGAGCGAGCTGGCTCGAACTTGACCGTGGCGATGTCGGATCCGTCCAACATCTA CGCGATCGACGAGCTGAAGTTCCTAACGCAGTACAACATCCGCCCGGTCGTGGCGTCCGAGAACGCCATCGAGGGCGCGA TCCAGCGCTACTACGACAAGGGTCCGAACCTCCACGAGATGATCGGGGATCTCGACGAGGACGTCGACTTCGCCGCGGCC GACGAGGAGTCGGTCAACATCGTCGACCTCGAGAACCAGGCCGGCGAAGCGCCCGTGGTCAAGCTGTGCAACGCCATCCT GTTGTCGGCGATCAAAAAGGGCGCCTCGGATATCCACGTCGAGCCCTACGAGAAGAGCTTCCGGGTGCGCTTCCGCATCG ACGGCATCCTCCACGAGGAGATGAACCCGCCGCTGCGCCTGCGCAACGCGATCACCAGTCGACTCAAGATCATGTCGAGT CTGGATATCGCCGAGCGGCGTCTGCCGCAGGACGGCCGCATCAAGCTCAAGATCGGCAAAGACCGCGAGATGGACTTCCG CGTCTCGTGTCTGCCGACGCTCTTTGGCGAGAAGATCGTCCTGCGTCTGCTCGACCGCTCGAACCTGCAGCTCGACATGA CCCGCCTGGGTTTCGAGCCCGAGCCGCTGTCGTACTTCAAAAAGGCCATCCACCTGCCCTACGGCATGGTGCTGGTGACC GGGCCGACGGGCTCTGGCAAGACGACTACGCTGTACTCGGCGCTGTCCGAGCTCAACACTACCGAGAGCAACATCAGCAC GGCTGAGGATCCGGTGGAGTTCAACCTACCCGGCATCAACCAGGTGCAGATGCACGAGGACATCGGCCTCAACTTCGCGA CCTCGCTGCGCTCGTTCTTGCGCCAGGATCCCAACATCATCATGGTCGGCGAGATCCGCGACTTCGAGACCGCCGAGATC GCGGTGAAAGCCGCGCTCACGGGCCACATGGTGCTGTCCACGCTGCACACCAACGACGCCCCCTCGACGGTCTCGCGCCT GCTCAACATGGGCGTCGAGCCGTTTTTGGTCACCGCGTCCGTCAACCTGGTGTTGGCCCAGCGCCTGGCGCGCCGCATCT GCGTCGAGTGCAAAGAGGAGACCGAGAAGCACCCCGAGGCGCTGCGCGACGTCGGCATGAGCGAGGACATGATCGCCGCG TGCAAGCCGATGGTCGGCCGCGGCTGTAGCTTCTGCGGCGAGACCGGCTACCGCGGCCGCGTCGCGCTCTACGAGGTCAT GCCCTTCACCGACGATCTCAAGGAGCTGGTGCTGCAGAACGCATCGGCGGCCGAAATAAAAATGGAGATGATCCGCGGCG GGGTGCAGACCCTGCGAATGGCCGGCCTCAACAAGATCATGGAGGGCATGACCACGCCGGAAGAGGTCATGCGAACCACG GTGGCAGACTGA Protein sequence : MSRIGELLVREKMITSDQLREAQSEAQRSGLRLGSALANLGIVDDDQLSKFVASQYGLKTVNLNSYTLDPELLKLIPKDV AQRHQVVPLERAGSNLTVAMSDPSNIYAIDELKFLTQYNIRPVVASENAIEGAIQRYYDKGPNLHEMIGDLDEDVDFAAA DEESVNIVDLENQAGEAPVVKLCNAILLSAIKKGASDIHVEPYEKSFRVRFRIDGILHEEMNPPLRLRNAITSRLKIMSS LDIAERRLPQDGRIKLKIGKDREMDFRVSCLPTLFGEKIVLRLLDRSNLQLDMTRLGFEPEPLSYFKKAIHLPYGMVLVT GPTGSGKTTTLYSALSELNTTESNISTAEDPVEFNLPGINQVQMHEDIGLNFATSLRSFLRQDPNIIMVGEIRDFETAEI AVKAALTGHMVLSTLHTNDAPSTVSRLLNMGVEPFLVTASVNLVLAQRLARRICVECKEETEKHPEALRDVGMSEDMIAA CKPMVGRGCSFCGETGYRGRVALYEVMPFTDDLKELVLQNASAAEIKMEMIRGGVQTLRMAGLNKIMEGMTTPEEVMRTT VAD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 8e-89 | 47 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-89 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Hoch_4828 | YP_003269211.1 | type IV-A pilus assembly ATPase PilB | VFG2048 | Protein | 3e-89 | 47 |
| Hoch_4828 | YP_003269211.1 | type IV-A pilus assembly ATPase PilB | VFG0112 | Protein | 2e-113 | 46 |
| Hoch_4828 | YP_003269211.1 | type IV-A pilus assembly ATPase PilB | VFG1880 | Protein | 1e-106 | 45 |
| Hoch_4828 | YP_003269211.1 | type IV-A pilus assembly ATPase PilB | VFG1876 | Protein | 6e-83 | 44 |
| Hoch_4828 | YP_003269211.1 | type IV-A pilus assembly ATPase PilB | VFG0233 | Protein | 1e-101 | 42 |
