Gene Information

Name : Hoch_4153 (Hoch_4153)
Accession : YP_003268544.1
Strain : Haliangium ochraceum DSM 14365
Genome accession: NC_013440
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 5723474 - 5724874 bp
Length : 1401 bp
Strand : +
Note : PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: bba:Bd1513 regulator prote

DNA sequence : 
GTGGGCTCGGTCCTGGTCGTCGATGACGAGCGCTCGATGCGCGAGTTTCTCGCCATTTTCCTGCGGCGCGCGGGGCACGA
AGTCGCGGTCGCCAGCTCGGGAAAAGACGGGCTGCAGCACCTGCTCGCGCACCGGCCCGACGTGGTCATCACCGACATCA
AGATGCCGGGCGAGATGAGCGGGCTCGACCTGCTGAGCGCGGCCAAGGCCCAGCAGGTCGACACAGAGATCATCGTGGTG
ACCGCCCACGGCACCCCCGAGCTGGCCATCTCGGCCATGAAGCAGGGCGCCTACGACTACCTGACCAAGCCGTTCAAGGT
CGACGACATCGGCGCCGTCATCGGCCGGGCCATGGAGAAGCGCGCCCTGGTCGCGGCCAACACCGCCCTGCGCGAGCAGG
TCGCGGGCCGCTACCGGCTGGCCTCGCTGCTCGGCAAGAGCCCGGCCATGCAGCGGCTCTTCGAGCTCATCACCAAGATC
CGCACCACCCGCACCAGCGTGCTCATCACCGGCGAGAGCGGCACCGGCAAGGAGCTGGTCGCGCGCGCGCTGCACAGCGA
AGGCGCACGCGCCGAGCAGCCCTTTGTCGCCGTCAACTGCGGCGCCATCCCCGAGGCGCTGATGGAGTCCGAACTCTTCG
GCCACGTCAAGGGCGCGTTCACGGGCGCGGTGCACGACAAGCTGGGTCTGTTTCAGCAAGCCGAGAGCGGCACTCTGTTC
CTCGACGAGATCGGCGAGCTGTCGCTGGGGCTCCAGGTCAAGCTGCTGCGCGCGCTGCAGGAGCGCGTGGTCAAGCCCGT
CGGCGGCACCGTCGAGCAAGCCGTGGACGTGCGCGTGGTCGCCGCCACCAATCGCGAGCTCGAGGCCGAGGTCGCGCGCG
GCACCTTCCGCAGCGACCTCTACTATCGCCTCAACGTCATCGAGCTGCGCCTGCCGCCCCTGCGCCAACGCCGCGAGGAC
ATCCCGCTGCTGGCCGATCACTTCCTGCGCCGCTTCGCGAGCGAACAGGGCAAAGCCGGCATGCAGTTCTCGCCCGAGGC
GCTGCGCGCGCTGCAGGACTACGACTACCCGGGCAACGTGCGGGAACTCGAGAACATCGTCGAGCGCGCCGTCATCCTGG
CCGCGGACAAGCACATCGGCACCGAGAGCCTGCCGGTCCCGCAGAGCAAACCGGCCCTGGGCGCCAGCGATGCCGACGAG
TTCGCCATCCCCGAGGACGGCATCGACCTCGATCGCGTGCTCGGCGACTACGAGCGCAAGATCCTCGAGCGCGCCCTGGC
GCAGAGCGACGGCGTGCGCAAGCGGGCCGCGCGCCTGCTCGGCATCAGCTTTCGCTCGCTGCGCTACCGGCTGAACAAGC
TCGGCCTCGAGACCGGCTGGGCCCCCGGCGACGGGGACTGA

Protein sequence : 
MGSVLVVDDERSMREFLAIFLRRAGHEVAVASSGKDGLQHLLAHRPDVVITDIKMPGEMSGLDLLSAAKAQQVDTEIIVV
TAHGTPELAISAMKQGAYDYLTKPFKVDDIGAVIGRAMEKRALVAANTALREQVAGRYRLASLLGKSPAMQRLFELITKI
RTTRTSVLITGESGTGKELVARALHSEGARAEQPFVAVNCGAIPEALMESELFGHVKGAFTGAVHDKLGLFQQAESGTLF
LDEIGELSLGLQVKLLRALQERVVKPVGGTVEQAVDVRVVAATNRELEAEVARGTFRSDLYYRLNVIELRLPPLRQRRED
IPLLADHFLRRFASEQGKAGMQFSPEALRALQDYDYPGNVRELENIVERAVILAADKHIGTESLPVPQSKPALGASDADE
FAIPEDGIDLDRVLGDYERKILERALAQSDGVRKRAARLLGISFRSLRYRLNKLGLETGWAPGDGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-71 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-71 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hoch_4153 YP_003268544.1 Fis family transcriptional regulator BAC0089 Protein 2e-88 50
Hoch_4153 YP_003268544.1 Fis family transcriptional regulator BAC0467 Protein 1e-81 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hoch_4153 YP_003268544.1 Fis family transcriptional regulator VFG1214 Protein 1e-87 47
Hoch_4153 YP_003268544.1 Fis family transcriptional regulator VFG0116 Protein 1e-60 45