Gene Information

Name : Hoch_3521 (Hoch_3521)
Accession : YP_003267916.1
Strain : Haliangium ochraceum DSM 14365
Genome accession: NC_013440
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4855223 - 4855987 bp
Length : 765 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cja:CJA_0029 ABC transporter ATP-binding protein

DNA sequence :
ATGATACGGCTGGACCAAATCAACAAGTCCTATCGCATGGGACACAGCAGCCTGCACGTGCTCAAGGACGTCGAGTTCAC
CGTCGAGCGCGGTGAGATGGTCTCGATCATGGGCTCCTCGGGCTCGGGCAAATCCACCTTGCTCAACATCCTGGGCCTGC
TCGACCGCTTCGACAGCGGCATCTACGAGCTCGACGGCACCTCGATGGGCAACCTGTCCGAGAGCAAGGCGGCCATCTAC
CGCAACCGCTTCATCGGCTTCGTGTTTCAGGCCTTCCACCTGCTGCCCTTCAAGAACGCGGTCGAGAACGTCGCCCTGCC
GCTCTACTATCAAAAGGTGCCGCGGCGCGATCGCAACCGCAAAGCCATGGAGTACCTCGAGCGCGTGGGGCTGGCGCAGT
GGGCCGAGCACCTGCCCTCGGAGCTCTCGGGCGGACAGAAACAGCGCGTGGCCATCGCCCGGGCGCTGATCACCGAGCCC
AGCATCATCCTCGCCGACGAGCCCACGGGCGCGCTCGACAGCGCCACCTCCGAGCAGATCATGCAGCTCCTCGAGGAGGT
CCACCGCGCCGGCATGACCATCGTCCTGGTGACTCACGAACCCGACATCGGCGCGCGCAGCGACCGCATCATCCGCCTGC
GCGACGGCCGCGTGCTCGCCCACGAGGCCGCCGCTACCGCGCCCGCCGATGCGCCCGCCGCGGCCCCGTCCGCGGCCCCG
TCTGCGGCCGATGCGCCCGCCGCCGCGCCGGCCGCGCAGTCCTGA

Protein sequence :
MIRLDQINKSYRMGHSSLHVLKDVEFTVERGEMVSIMGSSGSGKSTLLNILGLLDRFDSGIYELDGTSMGNLSESKAAIY
RNRFIGFVFQAFHLLPFKNAVENVALPLYYQKVPRRDRNRKAMEYLERVGLAQWAEHLPSELSGGQKQRVAIARALITEP
SIILADEPTGALDSATSEQIMQLLEEVHRAGMTIVLVTHEPDIGARSDRIIRLRDGRVLAHEAAATAPADAPAAAPSAAP
SAADAPAAAPAAQS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-32 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-33 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hoch_3521 YP_003267916.1 ABC transporter NC_012469.1.7686878. Protein 2e-54 57
Hoch_3521 YP_003267916.1 ABC transporter NC_008702.1.4606598. Protein 4e-41 49
Hoch_3521 YP_003267916.1 ABC transporter CP001581.1.gene798.p Protein 6e-39 47
Hoch_3521 YP_003267916.1 ABC transporter CP001581.1.gene598.p Protein 2e-35 42
Hoch_3521 YP_003267916.1 ABC transporter NC_012469.1.7686946. Protein 4e-29 41