Gene Information

Name : Hneap_2100 (Hneap_2100)
Accession : YP_003263965.1
Strain : Halothiobacillus neapolitanus c2
Genome accession: NC_013422
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2247894 - 2249294 bp
Length : 1401 bp
Strand : -
Note : PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: aeh:Mlg_1377 two component

DNA sequence : 
ATGACCGAGACGCGAAAACTAGGTGAACGTGTTTTGATCGTTGAGGACAACGATGGTCTGTGCGGGCTGCTTGAAGAAGA
ATTATGTGATGCGGGCTATGTCGTCGGCACGGCCACCACCGCTGAGGCGGCTTGGGAGCAGCTGACCGGCGGGATGTGGG
GGGTAGTGATCAGTGATTTGCGTCTTCCTGGCGCAGATGGGCTGACGCTTTTGCGTCAGGTGCAGCAATTAGCGCAGCCG
CCCGCGTTCATCATGATCACCGCCTTTGGCCGTGTCGATCAAGCGGTCGCGGCGCTCAAGGAGGGTGCTGATGAATTTCT
CGTTAAACCGGTTGATTTAGAGCACCTGTTGCTCTGCGTGCGCCGAGTGAGCGAGACCCGCCATCTGCGTCAAGAGTTGG
CACGATTCCGCACCTTGTTCCAAGACAGTGACTTTCACGGCATGATCGGCCGCAGCCCGGCGATGCAAGTACTTTATGCA
GAAATCAAGCAGATCGCTCGGGCTTCGGGGCCAGTGCTAATCACGGGGGAGAGTGGGGTTGGCAAGGAGTTGGTGGCGCG
CGCGTTACACCAAGAAAGTGAGCGCATCAACGGTCCCTTGGTACCTGTTAATTGCGCGGGCATACCCGCCGAGCTTCTGG
AAAGCGAGTTGTTTGGCCATGCTTCGGGTGCGTTTACCGGCGCGCAAAGGGCACGTCGCGGTCTAATCAGCGAGGCCGAC
GGCGGCACTTTATTGCTCGATGAAATCGGCGAGCTGCCAATGACGATGCAAGCCAAGCTGTTGCGCGTGCTCCAGGATCA
GCGAGTCCGCCCGGTTGGATCGAATCAGGAGCAGTCTATCGACCTTCGCGTTATCGCCGCCACCAATCGCGATCTGGAAG
CTGAAGTTGAAGCTGGCAGTTTTCGTGAGGATTTGTTTTACCGGCTTAACACCTTCACCTTGAAGGTGCCGCCATTGCGC
GAGCGCGGTGATGACCTGACGGTATTGGCGGCACATTTTATTAATCGATTCAGTGCACAGTTGGGGCACCCGATCAATGG
GCTTAATAATGAAGCCGTGCGTCTGTTGAACGCCTATTCGTTTCCCGGAAACATCCGCGAACTGGCTAACGCCATGGAAC
GGGCGGCTACCTTTTGCCCGGATTCGGAAATCTGTGCGGCTCATCTGCCCGAAACGATTCGGCAGGCCACTGGCACGGGA
CTCGATCCGGCACTGACGCAAGTTTTGTTGCCGCCGTCAGGTTTGCCGGCTCTGGATGAGATTGAGCTGCGCTACATTAA
TCACGTACTCACTCAAGTACGCGGTAATAAGCGCCGCGCCGCCACCATCTTGGGCATCAGCCGCCGTACGCTTTACCGGC
GACTCGGCGAAGACGATGGCAATGTCGCTGATGGCGCATGA

Protein sequence : 
MTETRKLGERVLIVEDNDGLCGLLEEELCDAGYVVGTATTAEAAWEQLTGGMWGVVISDLRLPGADGLTLLRQVQQLAQP
PAFIMITAFGRVDQAVAALKEGADEFLVKPVDLEHLLLCVRRVSETRHLRQELARFRTLFQDSDFHGMIGRSPAMQVLYA
EIKQIARASGPVLITGESGVGKELVARALHQESERINGPLVPVNCAGIPAELLESELFGHASGAFTGAQRARRGLISEAD
GGTLLLDEIGELPMTMQAKLLRVLQDQRVRPVGSNQEQSIDLRVIAATNRDLEAEVEAGSFREDLFYRLNTFTLKVPPLR
ERGDDLTVLAAHFINRFSAQLGHPINGLNNEAVRLLNAYSFPGNIRELANAMERAATFCPDSEICAAHLPETIRQATGTG
LDPALTQVLLPPSGLPALDEIELRYINHVLTQVRGNKRRAATILGISRRTLYRRLGEDDGNVADGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 5e-68 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 5e-68 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hneap_2100 YP_003263965.1 hypothetical protein BAC0467 Protein 5e-76 44
Hneap_2100 YP_003263965.1 hypothetical protein BAC0089 Protein 5e-79 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hneap_2100 YP_003263965.1 hypothetical protein VFG1214 Protein 5e-76 43
Hneap_2100 YP_003263965.1 hypothetical protein VFG1249 Protein 3e-55 42