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Name : Hneap_1612 (Hneap_1612) Accession : YP_003263487.1 Strain : Halothiobacillus neapolitanus c2 Genome accession: NC_013422 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 1750495 - 1752537 bp Length : 2043 bp Strand : - Note : KEGG: net:Neut_0116 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein DNA sequence : ATGCGTGTGTATTTATGTGAAAAGCCGTCACAGGCTCGGGATATTGCCGCTGTTTTGGGTATTCAGTCCAAAGATAAAAG CTCAATCACAACCGCCGATGGCGTGGTGACCTGGGCATTCGGCCATCTGCTCGAACAAGCGCCGCCCGATGCCTACGATG ACTCACTCAAGCGCTGGGCGCTGGCTTCATTGCCGATCGCGCCGACTCAGTGGAAAGTCGAGGTGAAATCGAGCGCCAAG GATCAATTTAAAGCCATCGCCACCTTGCTTAAAAGGGCCACTGAGGTGGTGATTGCCACCGATGCAGATCGTGAAGGCGA AATGATTGCGCGCGAGCTGATGGCGTTTGTGGGCTTCAAGGGCAAAGTTCAGCGATTGTGGTTATCTGCCCTCGATGCTG CTTCGGTCAAAAAAGCCTTGGCAGCTTTGAAGCCGAGTGCTGAAACCGCCGGTTTGTATCAATCGGCCCTTGGTCGGTCG CGGGCGGATTGGCTGGTGGGGATGAACCTCACGCGGGCATTTACCTTGGCGGGGTGTAGCCAGGGCGGGGAGGGTGTGCG CAGCGTGGGGCGAGTACAAACTCCAACCTTGAGCCTTGTTGTCGCGCGGGATCGTCAGATTGAGCATTTCAAGCCCGTGC CTTATTTCGAACTGTTCGGGTTCTTTGAAGCAGGGCAGTCATTCAGTACCAAATGGAAAGTGCCCGAAGGGGCTGGGGAT GACGCAGGGCGCTGTGTCGACCAATCAATCGTGGATGCCGTCGCCAGCAAAATCACCGGCAAAACGGGCACGGTAAGCCA GTATGAAACCAAGCGCATTAGTGAAAATCCGCCGCTGCCATTCAGCCTATCTACTCTGCAAAAAACCTGCTCGGCCAAGT TTGGTTTAGGTGCACAAGAAGTGCTGGATATTGCCCAGGCACTGTACGAAACCCACAAGGCCACCACCTATCCCCGATCG GATTGCAATTTTCTTCCCGAGGAGCAATTCCAAGAGGCATCTTCCATCGTAACGGCACTGGCCAAGTCAGATACCGAAGT GCAAGGGATCGTTGATTTGCTAGATTTCAGCCGGAAAAGCCCCGCCTGGAATACCAAAAAAATCACGGCGCACCATGCCA TCATCCCCACGCAAACGCCGCCAAATATGGATGCGATGAGTGACAACGAGCGCAGAGTCTATGAACTGATTCGTCGCCAA TATCTCGCGCAATTCTTACCCAACTATGAATATGACCGGACCCAGATTGGCATCAGCATCGAGGGCGAGTTATTTCAGAC CACCGGCAAAATTGACCAAGTGACCGGCTGGCGCGTGCTGTTCGGCAAAGCGGATGCCAGTGACGATGAGCCCGATGACG AGGTGCAAACCTTGCCCGCCTTGACGCAAGGCCAAACGCTGCCGCTGAGTCACACCGAAATTGCCGCCAAACAAACCAAA CCACCCTCACGCTACACCGAAGGCACCTTGATTGATGCCATGCAAACGATTGGGAAAAACATCACCGATCCACGGCTGAA GGCCATTCTCAAAGAAAACTCGGGCATCGGCACCGAAGCCACGCGCGCGGGCATTATTGCCAACCTGATTGAACGCGGTT TCATCACCAAAAAAGGCAAACAGGTCATCAGCAGTGATGTCGGCAGACAATTGATTGATGCACTGCCCGATTCCGTCAAA AGCCCTGCACTCACTGCCCTGTGGGAGCAGTCACTTGAAGAAATTGCCGAGGGCAAGCGTGAATTGGCGGGATTTGAGGC CGATGTCGTCAAATTCATCACCGCGATTATCGACCAGATCAAAAAGCAACACGCTGATGCACCAGCACCAACGCGGCCGA CGGCGGATTGCCCGACCTGCAAGGCGCAAGGCCAAGCTGAAAAAGTCTATTCCATCAAAAAACAATGCCACTACTGGCAC TGCAAAGCCTGTAACCAATGGTTTGATGACGCCGCCGGAAAGCCCGTGCCGAAAGCAGCGGCAAGTAGCTCGAAAACAAA GCCCGCACCACGCAAAAAAACTACGGCGAGAAAAGCAAAATGA Protein sequence : MRVYLCEKPSQARDIAAVLGIQSKDKSSITTADGVVTWAFGHLLEQAPPDAYDDSLKRWALASLPIAPTQWKVEVKSSAK DQFKAIATLLKRATEVVIATDADREGEMIARELMAFVGFKGKVQRLWLSALDAASVKKALAALKPSAETAGLYQSALGRS RADWLVGMNLTRAFTLAGCSQGGEGVRSVGRVQTPTLSLVVARDRQIEHFKPVPYFELFGFFEAGQSFSTKWKVPEGAGD DAGRCVDQSIVDAVASKITGKTGTVSQYETKRISENPPLPFSLSTLQKTCSAKFGLGAQEVLDIAQALYETHKATTYPRS DCNFLPEEQFQEASSIVTALAKSDTEVQGIVDLLDFSRKSPAWNTKKITAHHAIIPTQTPPNMDAMSDNERRVYELIRRQ YLAQFLPNYEYDRTQIGISIEGELFQTTGKIDQVTGWRVLFGKADASDDEPDDEVQTLPALTQGQTLPLSHTEIAAKQTK PPSRYTEGTLIDAMQTIGKNITDPRLKAILKENSGIGTEATRAGIIANLIERGFITKKGKQVISSDVGRQLIDALPDSVK SPALTALWEQSLEEIAEGKRELAGFEADVVKFITAIIDQIKKQHADAPAPTRPTADCPTCKAQGQAEKVYSIKKQCHYWH CKACNQWFDDAAGKPVPKAAASSSKTKPAPRKKTTARKAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 3e-145 | 52 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 8e-138 | 50 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 2e-131 | 49 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-131 | 49 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-131 | 49 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 4e-144 | 49 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 7e-144 | 49 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 2e-125 | 46 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 2e-118 | 43 |
