Gene Information

Name : Hneap_1507 (Hneap_1507)
Accession : YP_003263385.1
Strain : Halothiobacillus neapolitanus c2
Genome accession: NC_013422
Putative virulence/resistance : Virulence
Product : lipopolysaccharide biosynthesis protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3524
EC number : -
Position : 1632871 - 1633980 bp
Length : 1110 bp
Strand : -
Note : PFAM: lipopolysaccharide biosynthesis protein; KEGG: bch:Bcen2424_0778 lipopolysaccharide biosynthesis

DNA sequence : 
GTGTCCTCCATTCTTAAGCTGTTCAAGAACGTTTTCTTTTGGATTTTCGTACTGATCCCGACATTAATCGTTTCTGCTTA
TTACGGGCTCGTTGCCTCGAATATTTATGTGTCCGAGTCACAAGTCGTGGTTCGCAGTGCCGATAAATCCAGTATTTCCA
GCGCCAGTTTATCGGGATTGTTTCAAGGCTTTGGGTTTTCCAACTCGCAATCGGATGCCTATGTAATACAAAACTATGTG
GTCTCTCACGCGGCCGTCGATCGCTTGATCAAGCAATACCCTGTTATAAACTGGTATTCCTCCAAAAATGTGGATCCAAT
CAGCCGTTTCAATGGTTTCGGGCTGGATGGCAGCCTGGCGAACTTCTACAAATACTTCGTCAAGCAGCTAGGCGTGTCGG
TCGATCCGATGAGCTCGGTGCTCACTATTTCCGTTAAGGCATTCAAGGCAGATGAAGCGCAAACCATCAACCGCTCTTTG
ATTAGTTACAGTGAGGAGCTGGTTAACCAACTCAATGACCGTGCTCGACGAGACACGATTTCTTTTTCAGTCAATCAAGT
AGATAAAGCAAAAGAACAGGCGCGCGAGTCCGCCTCGAAACTGGCGCAATTCCGCAATGAATCCGGGTTACTTGATCCGC
AAAAAGAGGCGGAATTACCGCTCACGATGATTGGCACACTGCAAGGCAAGTTGCTCGATGTGCGCAGCCAATTGGCTCAG
TTGGTGGTAGTTAGTGGCAATAGTCCGCAAATACCCGTGCTGAAAAGAGAAGAGACACTGCTAAAGAATGAAATTGAGCG
ACTGGAAAACAAAGTAGCCGGTTTGTCCGGTGGTTCTATCGCCACCAAAATGATCGAGTACCAGCGTCTCACCCTCGAAA
ACAGCCTAGCCGAACAACAACTGGGCAGTGCACTAGCCTCGCTGGAGCAAGCCAATGCAGACGCCCGAAAAAAACAACTC
TATCTTGAGCGCATTTCAGCACCCAATTTGCCGGATGAAGCCTTTTTGCCGCATCGCCTGCAAATCGTGCTGGCAACTTT
CCTGCTGGGCCTGATTATCTGGGGGATTGTTGAATTGCTGACGGCCGGTATTCGTGAGCACATCGAGTAA

Protein sequence : 
MSSILKLFKNVFFWIFVLIPTLIVSAYYGLVASNIYVSESQVVVRSADKSSISSASLSGLFQGFGFSNSQSDAYVIQNYV
VSHAAVDRLIKQYPVINWYSSKNVDPISRFNGFGLDGSLANFYKYFVKQLGVSVDPMSSVLTISVKAFKADEAQTINRSL
ISYSEELVNQLNDRARRDTISFSVNQVDKAKEQARESASKLAQFRNESGLLDPQKEAELPLTMIGTLQGKLLDVRSQLAQ
LVVVSGNSPQIPVLKREETLLKNEIERLENKVAGLSGGSIATKMIEYQRLTLENSLAEQQLGSALASLEQANADARKKQL
YLERISAPNLPDEAFLPHRLQIVLATFLLGLIIWGIVELLTAGIREHIE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrB NP_273136.1 capsule polysaccharide export inner-membrane protein Not tested IHT-A Protein 3e-63 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hneap_1507 YP_003263385.1 lipopolysaccharide biosynthesis protein VFG0686 Protein 3e-65 44
Hneap_1507 YP_003263385.1 lipopolysaccharide biosynthesis protein VFG0698 Protein 3e-65 44
Hneap_1507 YP_003263385.1 lipopolysaccharide biosynthesis protein VFG0256 Protein 1e-63 41