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Name : Hneap_1253 (Hneap_1253) Accession : YP_003263136.1 Strain : Halothiobacillus neapolitanus c2 Genome accession: NC_013422 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 1357377 - 1358339 bp Length : 963 bp Strand : - Note : PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: aeh:Mlg_1309 sigma-54 dependent trancsriptional regulator DNA sequence : ATGAAAGATCATTCTTTGTTCACGCAGATTTGGACTCAATCGCCCGTGTTCGAATCGGTCCTGCGAAGCGTTCAAATTGT CGCTGCGACCGAGGCGACTACCTTGATTCTTGGGGAATCAGGTACCGGCAAGGAACTCGTTGCGCGTGCGTTGCATGACG GTTCCGGGCGTCGGGCTCGACCATACGTCGCAGTCAATTGCGCCAGCTTCTCTGAAGCTTTGGCAGAGTCGCAATTGTTT GGCCATAAGCGGGGCGCGTTCACGGGCGCTCAGTGTGATTATGATGGTCAAATTCGTTCGGCTGATGGCGGGACACTTTT TCTTGATGAAATAGCCGAGTTGAGTTTGCCTGTGCAAGCCAAGTTGCTTCGTTTTCTGGAAACGGGTGAGGTGATGGGGC TGGGTGAATCTCAAAGCCGACGAGTCGATGTTCGTCTTGTGGCTGCGACACACCGGGATTTGCTTCAGATGGTTGAGCAG GGGCTTTTCCGGGCTGATTTATTCTATCGCCTTCAGGTCGTACCCATTGAATTACCCCCACTTAGGATGCGTCAGGGTGA TATTGATTGGTTGCTGGCGCGATTCATGAATGAGTTTGCCGAACGGTACACACTGCATATGCCCCGGCTCACCTCAAAGG CGCGTGGTGTGATCAGACGACATCCTTGGCCTGGAAACGTGCGTGAATTGCGTAATATGGCAGAACGCTTGGTTATCCTG CACTCGGGCAAATCTGTTGATGTAGATAACCTCCCACATGAATTGCGTAGTCCTGATTCAAGGGAAAACACCACTCGCCG TTTCCATCTGCCGGAAAATGGCGTTGATCTCGAAGCCATCGAGTCCGATTTGCTGCGTCAAGCGCTGCTGCGAACAGGTG GAAACAAGAGTAGAGCGGCTCGATTATTGAACTTGTCTCGCGACACCTTTCTTTATCGGCTCAAAAAGTTTTCTATTCAG TAG Protein sequence : MKDHSLFTQIWTQSPVFESVLRSVQIVAATEATTLILGESGTGKELVARALHDGSGRRARPYVAVNCASFSEALAESQLF GHKRGAFTGAQCDYDGQIRSADGGTLFLDEIAELSLPVQAKLLRFLETGEVMGLGESQSRRVDVRLVAATHRDLLQMVEQ GLFRADLFYRLQVVPIELPPLRMRQGDIDWLLARFMNEFAERYTLHMPRLTSKARGVIRRHPWPGNVRELRNMAERLVIL HSGKSVDVDNLPHELRSPDSRENTTRRFHLPENGVDLEAIESDLLRQALLRTGGNKSRAARLLNLSRDTFLYRLKKFSIQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 9e-39 | 43 |
| hrpRS | ABA47311.1 | HrpRS | Virulence | S-PAI | Protein | 3e-35 | 42 |
| hrpS | AAD24684.1 | sigma-54-dependent enhancer-binding protein HrpS | Virulence | Hrp PAI | Protein | 6e-34 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Hneap_1253 | YP_003263136.1 | hypothetical protein | VFG1214 | Protein | 5e-48 | 42 |
| Hneap_1253 | YP_003263136.1 | hypothetical protein | VFG1248 | Protein | 6e-51 | 42 |
