Gene Information

Name : Hneap_0982 (Hneap_0982)
Accession : YP_003262865.1
Strain : Halothiobacillus neapolitanus c2
Genome accession: NC_013422
Putative virulence/resistance : Unknown
Product : ABC transporter
Function : -
COG functional category : R : General function prediction only
COG ID : COG4172
EC number : -
Position : 1057975 - 1059669 bp
Length : 1695 bp
Strand : +
Note : PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: rme:Rmet_2143 ABC transporter-related protein

DNA sequence :
ATGTCGGTTGAGTCGATGCCGGACGTTCTTTCGGGTGATGCCACGAGTCCTGTTCATCATGATTCCCGCCTTGATTCCCG
CCTTGATTCCACGGCGTTGCTGTCAATCCGCGATCTGACCGCCCAGTTCACGCCCGGTGATGAAATTCTCTCGTCGGTCA
GTCTTGATGTGTTGCCCGGACAGCGAATGGCTCTGGTCGGAGAATCCGGTTCCGGGAAGACGATTACTGCGCTCTCTGTC
TTACGTTTATTGGATAATTTGCAGTACACGTCCGGGTCGATCACGTTCGATGGCCAGAATGTTCTGACCATGCCTCAGCA
TGCCTTGCGCCGCATTCGTGGACGTGAAATCAGCATGATTTTTCAGGAACCGATGACCGCTTTTAATCCCTTGAAAACCA
TTGGGGAGCAAATAGCCGAGGTCACGATTGCGCATGAAGGGTTGACGAGGGCAGAGGCGCAACGCCGCGCCATCGAATGG
CTTGAACGGGTACGCCTGCCCGATCCTGAACAACGGGCACGCGTGTTTCCACACCAGCTTTCAGGAGGGCAGCGACAACG
GGCCATGATTGCGATGGCCCTGGTTTGTCGGCCTAAATTGCTGATTGCCGATGAACCAACAACGGCGCTGGATGTGACAT
TGCAGAGCCAGATGATGGATCTGCTGACCGAGCTTCAGCAGGAGATGGGCATGGCATTGCTGCTGATTACGCACGATCTG
AATCTCGTTCGACGTTATGCCGATGCGGTTGCTGTGATGAAGCAAGGTCGGATCGTCGAACGCGGTGAAGTCGGTGAGAT
CTTTTTATCGCCTTGGCATCCTTATACCCAGCAATTGCTGGCGGCAACGCCGCAACCTGAACCTTTGCCGGTCATTTCCA
TGAATGCCCCTGAGGTGCTCGGCGCGAATGATCTCAATGTTGAATTCAAGCAGCCTCGCCAATTCGCTCCGGGTGAGCGT
CGTTATTGGTGGCTGTCCAGTTCGGTCCCATTCCAGGCTTTATCTCATATTGATATCTCCGTATCGGCAGGGGAAACCTT
GGGTGTGATCGGAGAATCGGGCTCGGGGAAAAGCACGTTGGCGCTGGCACTGTTGCGCCTGATTCATTCAAGGGGAAACA
TTCTGCTTGAGGGCAGGGCAGTTGAACATCTGAGTGAATCTGAGTTTCGCCCGCTGCGCCGCCATATCCAGATCGTTTTT
CAGGATCCGTTTGGTTCCTTATCACCGCGGATGACCATTGGCGAATTGGTTGGCGAGGGTTTGCGCGTACACGAGCCTCG
TTTGGCCAAGAACGAATATGCGGCTCGGGTGCAGGAGGCGATGGCCTCTGTCGGACTGGGTGGTGTGAGCCTGCACCGTT
ATCCGCATGAATTTTCGGGCGGGCAGCGCCAACGGATTGCCATTGCTCGTGCCTTGATTCTCAGGCCGCGAATTCTGATC
CTCGATGAACCGACCAGTGCGCTGGATGCGACCGTGCAGAAACAGATTCTGGCTCTGCTGCGCACGTTGCAAGAGGAGCT
CGGACTCACTTATGTGTTCATTACCCACGACTTGCGGGTTGTACGGGCCATGGCCCATCGCGTGATGGTTCTGTACCGGG
GTGCCGTTGTCGAAACAGGCGCGACTGCGACGGTGTTTGAATCGCCGAGTCATGCCTATACACGACAACTGATCGCCAGT
GTGATTGATCAATAA

Protein sequence :
MSVESMPDVLSGDATSPVHHDSRLDSRLDSTALLSIRDLTAQFTPGDEILSSVSLDVLPGQRMALVGESGSGKTITALSV
LRLLDNLQYTSGSITFDGQNVLTMPQHALRRIRGREISMIFQEPMTAFNPLKTIGEQIAEVTIAHEGLTRAEAQRRAIEW
LERVRLPDPEQRARVFPHQLSGGQRQRAMIAMALVCRPKLLIADEPTTALDVTLQSQMMDLLTELQQEMGMALLLITHDL
NLVRRYADAVAVMKQGRIVERGEVGEIFLSPWHPYTQQLLAATPQPEPLPVISMNAPEVLGANDLNVEFKQPRQFAPGER
RYWWLSSSVPFQALSHIDISVSAGETLGVIGESGSGKSTLALALLRLIHSRGNILLEGRAVEHLSESEFRPLRRHIQIVF
QDPFGSLSPRMTIGELVGEGLRVHEPRLAKNEYAARVQEAMASVGLGGVSLHRYPHEFSGGQRQRIAIARALILRPRILI
LDEPTSALDATVQKQILALLRTLQEELGLTYVFITHDLRVVRAMAHRVMVLYRGAVVETGATATVFESPSHAYTRQLIAS
VIDQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 6e-73 43
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 6e-73 43
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 6e-73 43
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 6e-73 43
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 4e-81 42