Gene Information

Name : Pecwa_0718 (Pecwa_0718)
Accession : YP_003258145.1
Strain : Pectobacterium wasabiae WPP163
Genome accession: NC_013421
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 751931 - 753190 bp
Length : 1260 bp
Strand : -
Note : PFAM: integrase; KEGG: pct:PC1_0871 integrase

DNA sequence : 
ATGCCTCTGACTGATACCGCCATCCGCAACGCCAAACCGCTCGATAAACCTTACAAACTCAGCGACGCGCAGGGTCTGTA
CCTGCTGATTAAACCTAACGGTTCCAAGCTCTGGCATCTTAAGTACCGCTTCGGCGGCAAGGAGAAGAAGCTGGCGTTTG
GCGCTTACCCGACTGTCTCGCTTGCCAGTGCCCGTAAACTGCGTGAAGAAGCCCGAACTATTCTCAGCGCAGGAGACGAT
CCCGGCGTAAAAAAACAGCACGACAAACAGGCGAAGAAAAACGGCAATACCTTTGAAGCCATTGCTCGTCAGTGGGTGGC
CGCGAACATTCGCTGGAGTGAAGCACACACCGACAAAGTCCTGCGTTCACTGGAACTGCACGTTTTCCCGCTCATCGGCA
ATGTCCTTGTCACCGACCTGAAAACCGCCAACCTGCTGATCCCGTTGCGGGTAGCGGAGAAAAAGGGTTGTCTGGAAACT
GCTGCACGGATACAGCAACGCACGACAGTCATCATGCGTTACGCCGTACAGGAAGGACTGATTGCCAGCAATCCGGCCAA
TGACCTCTACGGCGCTATCACCCCGCCGCCGAAAAACCATTACCCTGCCCTACCGCTGGAAAAGTTGCCGGAACTGCTGG
AAAGAATAGAAGGCTATTCAGGCAGACTGCTAACAAGGTTGGCGGTACAGCTTAATTTGCTGATCTTTATCCGCTCCAGT
GAATTGCGTTTTGCCCGTTGGGTAGAGATCGATCTGGATAACGCCATGTGGACACTTCCCGCACAGCGGGAGCCTATCGC
TGGCGTGCGCCACTCAGAGCGTGGCGCAAAAATGAAAACGCCGCATCTTGTGCCACTGTCAAAACAGGCGGTAACGGTGC
TGAAACAGCTAAAACTGTTGTCCGGCAACGGGGATTTACTTTTCCCCGGCGATCACGATGCCCTTAAGCCAATGAGTGAG
AACACCATCAACAAGGCACTGCGCACGATGGGCTATGACACACAGGTGGATATCTGCGGACATGGCTTTCGCACAATAGC
ATGTAGCGCGTTGATTGAATCAGGTCGCTGGTCAAAAGATGCCGTGGAGCGACAGATGAGCCATCAGGAGCGCAATCACG
TTCGTGCCGCCTATATTCACAAAGCGGAGCACCTCGACGAACGGACTCAGATGATGCAATGGTGGTCAGATTATCTCGAT
GCCTGCCAGCATCAATTCATCCCGGCTTATCGCTTTGAGAAGTCGATTAAGGTTGCCTGA

Protein sequence : 
MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTVSLASARKLREEARTILSAGDD
PGVKKQHDKQAKKNGNTFEAIARQWVAANIRWSEAHTDKVLRSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLET
AARIQQRTTVIMRYAVQEGLIASNPANDLYGAITPPPKNHYPALPLEKLPELLERIEGYSGRLLTRLAVQLNLLIFIRSS
ELRFARWVEIDLDNAMWTLPAQREPIAGVRHSERGAKMKTPHLVPLSKQAVTVLKQLKLLSGNGDLLFPGDHDALKPMSE
NTINKALRTMGYDTQVDICGHGFRTIACSALIESGRWSKDAVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLD
ACQHQFIPAYRFEKSIKVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-167 85
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-167 85
int AAK16198.1 Int Not tested PAI-I AL862 Protein 3e-121 62
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 3e-121 62
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 6e-119 61
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 9e-119 61
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-119 61
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-119 61
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-118 61
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-118 61
int AAK00456.1 Int Not tested SHI-1 Protein 8e-111 61
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 8e-120 61
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 6e-120 61
int AAL51028.1 CP4-like integrase Not tested LEE Protein 6e-120 61
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 4e-119 61
int-phe AAL60261.1 Int-phe Not tested LEE Protein 6e-120 61
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 3e-121 61
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 9e-120 61
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 3e-117 61
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 9e-120 61
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 6e-118 61
int AAL51003.1 CP4-like integrase Not tested LEE Protein 9e-120 61
int CAC81896.1 integrase Not tested LEE II Protein 2e-111 61
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 1e-113 59
int YP_002346908.1 integrase Not tested HPI Protein 5e-116 58
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 5e-116 58
int2 NP_993013.1 integrase Not tested HPI Protein 5e-116 58
int CAA08754.1 integrase Not tested HPI Protein 1e-116 58
int CAA21384.1 - Not tested HPI Protein 5e-116 58
int CAB59974.1 integrase Not tested HPI Protein 2e-117 58
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 9e-80 57
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 3e-91 57
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 3e-108 56
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 3e-108 56
unnamed AAD17660.1 unknown Not tested HPI Protein 2e-112 56
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-109 55
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-94 53
int AAD44730.1 Int Not tested SHI-2 Protein 2e-74 43
int CAC39282.1 integrase Not tested LPA Protein 7e-75 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 7e-75 43
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 6e-72 43
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 8e-73 43
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 1e-72 43
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 1e-72 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-74 42
int ACU09430.1 integrase Not tested LEE Protein 5e-74 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 6e-74 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 6e-74 42
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 6e-68 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pecwa_0718 YP_003258145.1 integrase VFG0626 Protein 1e-119 61
Pecwa_0718 YP_003258145.1 integrase VFG1693 Protein 2e-118 61
Pecwa_0718 YP_003258145.1 integrase VFG1536 Protein 7e-114 59
Pecwa_0718 YP_003258145.1 integrase VFG0598 Protein 4e-73 43
Pecwa_0718 YP_003258145.1 integrase VFG0783 Protein 3e-74 42