Gene Information

Name : Pecwa_4016 (Pecwa_4016)
Accession : YP_003261352.1
Strain : Pectobacterium wasabiae WPP163
Genome accession: NC_013421
Putative virulence/resistance : Virulence
Product : BasR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4419965 - 4420633 bp
Length : 669 bp
Strand : +
Note : response regulator in two-component regulatory system with BasS

DNA sequence : 
ATGAAATTATTGATTGTTGAAGACGATAAGCTGCTGCAAGAAGGATTATTATTGGCGCTGAGTCATGAAGGCTATGCCTG
CGATTGCGCAGGCACGGCCAAAGAAGCGGATGCGCTCATCGGCAGCGCACACTACAGTCTGGTGATCCTCGATCTTGGCT
TGCCGGACGACGACGGCCTCGCCCTACTATCCCGATGGCGTAAGAATAATTACCAGCATCCCGTACTCATCTTAACGGCG
CGGGATAAGGTCGACGATCGCGTCAGCGGATTGGATGTTGGCGCAGACGATTATCTCGCCAAGCCTTTTGCACTGACGGA
ATTACAGGCGCGAGTACGCGCGCTGATTCGCCGCAATCAGGGGTCGAGCAACAGCAAGATACAGGTCGACAACATTACGT
TGGATTTAAACAACCAACAGGTGCTGCTGGACGAAAAGCCGGTAGTGCTGACGCCAAAAGAGTTTGCGATACTTTCCCGC
CTGGTGTTGAAAGCCGGTTCTCAGGTACACCGAGAACTTCTACATCAGGATATTTATGCCTGGAACGACGACCCGTCCTC
GAATTCGCTTGAGGTACATATCCACAATCTGCGTCAAAAGATAGGGAAAGACCGGATCCGAACTCTGAGAGGATTTGGCT
ACCTGCTGACCAAAGGGGAACAACCATGA

Protein sequence : 
MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALIGSAHYSLVILDLGLPDDDGLALLSRWRKNNYQHPVLILTA
RDKVDDRVSGLDVGADDYLAKPFALTELQARVRALIRRNQGSSNSKIQVDNITLDLNNQQVLLDEKPVVLTPKEFAILSR
LVLKAGSQVHRELLHQDIYAWNDDPSSNSLEVHIHNLRQKIGKDRIRTLRGFGYLLTKGEQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-28 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pecwa_4016 YP_003261352.1 BasR family transcriptional regulator BAC0487 Protein 1e-84 99
Pecwa_4016 YP_003261352.1 BasR family transcriptional regulator NC_002516.2.879194.p Protein 6e-26 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pecwa_4016 YP_003261352.1 BasR family transcriptional regulator VFG0473 Protein 3e-59 61