Gene Information

Name : Pecwa_3716 (Pecwa_3716)
Accession : YP_003261058.1
Strain : Pectobacterium wasabiae WPP163
Genome accession: NC_013421
Putative virulence/resistance : Virulence
Product : small multidrug resistance protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2076
EC number : -
Position : 4093629 - 4094045 bp
Length : 417 bp
Strand : +
Note : PFAM: small multidrug resistance protein; KEGG: eca:ECA3770 quaternary ammonium compound resistance protein

DNA sequence : 
ATGTCACCCAGAAAGCAGTCATGGCTGTGGATGTTATTCGTCATCTTGTCAGAAACGTCCGCCACGTCCACGTTAAAAAT
GTTTGATAATAGTCAGGGGTCGACAAAAATAGCGTTATTAGCCGTTATTATTCTGCTGTACTGCATTTGTTATTATTCAC
TATCAAAAGCCGTAAAACATCTTCCCGTAGGTCTGGCCTATGCCACCTGGTCTGGCACCGGTATTTTATTAGTTTCGACG
CTCAGTATTATTTTTTACGGCCAACACCCCGATATTCCTGCCATCATTGGGATGGTTGTGATTGCTACTGGCATAGCCAT
CATGAATCTCTTTTCTAAAATGGGCGCAGATGAACAGCCCGAGGCGATAACAAGCGGCGATCAGAATCAGCCATTAGATA
CAAAAATCATTCATTAA

Protein sequence : 
MSPRKQSWLWMLFVILSETSATSTLKMFDNSQGSTKIALLAVIILLYCICYYSLSKAVKHLPVGLAYATWSGTGILLVST
LSIIFYGQHPDIPAIIGMVVIATGIAIMNLFSKMGADEQPEAITSGDQNQPLDTKIIH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42068.1 hypothetical protein Not tested PAI II 536 Protein 2e-43 77

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pecwa_3716 YP_003261058.1 small multidrug resistance protein BAC0324 Protein 9e-14 45
Pecwa_3716 YP_003261058.1 small multidrug resistance protein BAC0002 Protein 1e-11 44
Pecwa_3716 YP_003261058.1 small multidrug resistance protein NC_010410.6003348.p0 Protein 1e-11 44
Pecwa_3716 YP_003261058.1 small multidrug resistance protein BAC0150 Protein 4e-12 43
Pecwa_3716 YP_003261058.1 small multidrug resistance protein CP001138.1.gene1489. Protein 3e-13 42
Pecwa_3716 YP_003261058.1 small multidrug resistance protein NC_002695.1.913273.p Protein 6e-12 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pecwa_3716 YP_003261058.1 small multidrug resistance protein VFG1587 Protein 8e-44 77