Gene Information

Name : Pecwa_2211 (Pecwa_2211)
Accession : YP_003259588.1
Strain : Pectobacterium wasabiae WPP163
Genome accession: NC_013421
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 2402709 - 2403623 bp
Length : 915 bp
Strand : -
Note : PFAM: periplasmic solute binding protein; KEGG: eca:ECA2392 periplasmic chelated iron-binding protein

DNA sequence : 
ATGATTGGTTTTCACACCCTTTTATCTGCCTTGTTCCGCCGTATTGCGCTATCGTGCGCCTTGCTGCTTTTAGCCAGCAC
ATCCGTTCAGGCAACTGAAAAACTAAAAGTTATCACCACCTTTACCATTATTCAGGATATCGCCCAAAACATCGCTGGCG
ATGCTGCAACGGTTGAGTCCATAACCAAACCAGGTGCAGAGATTCATGATTATCAACCAACACCGCGCGACATCGTTAAA
ACACAATCTGCACAACTGGTGCTGTGGAACGGTATGAACCTTGAGCGCTGGTTTACGCGCTTTTTTGAAAATGTCAAAAA
TGTGCCCGCCGTCGTGGTGACGGAAGGCATTACGCCGCTCCCTATTCGCGAAGGTGCCTATAATGGCAATCCGAATCCGC
ATGCCTGGATGTCCCCTTCCAATGCGTTAATTTATATTGAAAACATTCGCAAAGGTTTGGTTCAAGCCGATCCTGCTAAT
GCAGAGACCTATAACCGTAACGCCAAGGCCTATGCGGAAAAAATTAAGGCACTTGATGCACCACTGCGTGAGCGCCTCTC
CCGCATTCCAGAGCAGCAACGTTGGTTGGTCACCAGTGAAGGCGCATTTAGCTATCTGGCGAAGGATTATCAATTCAATG
AAGTCTATCTCTGGCCAATCAATGCCGACGAACAAGGTTCACCGCAGCAGGTACGTCGGGTGATTGATACCGTGCGTGAA
AAGGCAATCCCTGTGGTGTTTAGTGAAAGCACCATTTCCGATAAGCCCGCAAAACAGGTCAGCAAAGAAACAGGGGCGAA
ATATGGTGGCGTGCTGTATGTTGATTCTCTGTCTACGGAAAAAGGCCCCGTGCCGACCTATATCGACCTGTTACAAGTGA
CGGTGGAAACCATCGCGAAAGGATTTAATCAATGA

Protein sequence : 
MIGFHTLLSALFRRIALSCALLLLASTSVQATEKLKVITTFTIIQDIAQNIAGDAATVESITKPGAEIHDYQPTPRDIVK
TQSAQLVLWNGMNLERWFTRFFENVKNVPAVVVTEGITPLPIREGAYNGNPNPHAWMSPSNALIYIENIRKGLVQADPAN
AETYNRNAKAYAEKIKALDAPLRERLSRIPEQQRWLVTSEGAFSYLAKDYQFNEVYLWPINADEQGSPQQVRRVIDTVRE
KAIPVVFSESTISDKPAKQVSKETGAKYGGVLYVDSLSTEKGPVPTYIDLLQVTVETIAKGFNQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-91 65
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-91 65
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-91 65
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-91 65
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 2e-91 65

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pecwa_2211 YP_003259588.1 periplasmic solute binding protein BAC0439 Protein 2e-112 83
Pecwa_2211 YP_003259588.1 periplasmic solute binding protein BAC0349 Protein 1e-91 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pecwa_2211 YP_003259588.1 periplasmic solute binding protein VFG0525 Protein 9e-92 65