Gene Information

Name : Pecwa_1930 (Pecwa_1930)
Accession : YP_003259317.1
Strain : Pectobacterium wasabiae WPP163
Genome accession: NC_013421
Putative virulence/resistance : Virulence
Product : TonB-dependent receptor
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG4771
EC number : -
Position : 2093497 - 2095605 bp
Length : 2109 bp
Strand : +
Note : PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: eca:ECA2722 exogenous ferric siderophore TonB-dependent receptor

DNA sequence :
ATGGCAATAAATATAAGAAAATCGGTGGCATTGGCACTTGCTACAACCGTATCTACACCTGTTATCGCCGCACAGGACGA
TACGCTGGTTGTAACGGCTTCTGGCTATGAACAAAAAATCACTGAGGCGGCAGCGAGTATTTCTGTTGTCAACCAGGATG
AACTGACGAAGCGTAAATATAACGATCTTGGCGAAGCGCTCAGCGACGTGGAAGGCGTGGATGTGCGTAGTTCAACGGGG
AAAACGGGCGGTCTGGACATCAGCATTCGCGGTATGCCAAGTGATTACACGCTGATTCTGGTTGATGGTATTCGCCAGAA
TGGTTCATCGGATGTCACCCCGAACGGGTTTGGTACGATGAACACCAGCTTTATTCCCCCATTGGCGGCGATAGAGCGTA
TTGAAGTTATCCGCGGGCCGATGTCAACGCTATATGGCTCTGATGCGATGGGTGGTGTGGTCAATATCATCACCAAAAAA
GCGTCGAAAGAGTGGGTTGGGAATATCACGCTGGATCATACCTTCCAGGAAGACAGAGACTATGGCGATGCTTCCAAGTT
CTCGATTTATTCCAGCGGTGCGCTGATCGAAGACAAACTGGGACTCGCCCTGCGCGGCAATATTTTACGCCGTGATGCGT
CAGAGGTGAAATCTTCAGAGGGCGCTTTACTGAATCAGCGAGGCGCTAACCCTGTAAAATCAGATAACTATTTGCTAGGC
GGCAAGTTAACTTGGATCCTGAATGATAATAACTCTCTATGGCTGGATGGGGAAGTTGCCAACCAGCAATATGATAACAA
GGAAAATCAGTTAGGAACGATTGGTGCTACCGGGGGCTATGAGGGCTCCTTGCATTATCAACGTCGCAAGTTAACGTTGG
GGAGTGATAATCAACTGAGTTTTGGTTCATGGAACTCTAGCTTGTCTTATAGCGAGACGGATAACAAAGGCCGCCTCATT
ACAACCGATTCTGTTCCCGCGGGTTCAGCAGCGGCAGGTCAGAAACGTCGTCTGGAAAATACCAACGTTATTCTTGACTC
GAAGCTGGTGGCTCCAGTAGGTGAAAGCCACTTGGTTACTATTGGCGGCCAGTATTGGAATGCAACGATGAAAGATGGCG
TCGTTTTGGCTAACGATGGGAATAAGTTTAAGCAAGATTCATGGGCGCTGTTTAGCGAAGATGAATGGCGCTTGCTGGAT
TCATTAGCTTTAACCTATGGCGCACGCTATGAGTATCATGAAACCTTCGGTGGCCATGTTAGCCCACGTGCTTATCTCGT
TTGGAATGCATTGGATGACTTGACGATAAAAGGCGGTGTAAGTACGGGTTATAAAACCCCGTCACTGGCGCAACTCCATA
ACGGCGTTAGCGGGGTAACAAATCAAGGAACGGATACTGTCATTGGGAATCCAAACCTGAAGCCTGAAGAGAGTACGAAT
ACTGAACTGGGCGTTTATTATGAGAACTATACTGGCTTCGCGGCGAATGCAACGCTGTTCAATAATCATTTCCGCAATAA
AATTGACAGTTATAGTGTGTCAACTAACCCTGCGATTAGTACCTACCGAAACATTGGCAAGGCAGTGACTCAAGGGGTAG
AGCTGGGCTCGAAAATTCCATTGTGGTCAGAGGATTGGACGCTGAATGTAAACTATACCTTTACGGATAGTGAGCAAAAA
GGTGGCTTAAACCCAGGAGCGCCTCTTACCAACACGCCGAAGCACATGGCTAATGCCCGTCTTAACTGGAACGTTAATGA
CAATCTCTCAACGTGGTTGAAAGCAGAATATCGCGACAAAACTGCACGCTATACGCAGAATTATAGTAACTTGCCTGCTT
CTCAGAAGGCTGCATATGATGATAAAGGCGCTTACTTTAAATCTTTCACGGTGCTTAATTGGGGTGGTTCCTACAAGGTT
TCAAAAGATGTGACCTTGAATGGAGCAGTAAACAACCTGTTGGATAAAGATTTCACCAGTGGTGTGCGCACTTACGGTTC
AGGAAGAGGTGCATTTACTACCGCGGATTATTACTCTTTCAACCGAGTTACTTCAGGTTCCGTACTGCCAGGTCGTAACT
ACTGGGTGTCAGTCAACGTCAACTTCTGA

Protein sequence :
MAINIRKSVALALATTVSTPVIAAQDDTLVVTASGYEQKITEAAASISVVNQDELTKRKYNDLGEALSDVEGVDVRSSTG
KTGGLDISIRGMPSDYTLILVDGIRQNGSSDVTPNGFGTMNTSFIPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITKK
ASKEWVGNITLDHTFQEDRDYGDASKFSIYSSGALIEDKLGLALRGNILRRDASEVKSSEGALLNQRGANPVKSDNYLLG
GKLTWILNDNNSLWLDGEVANQQYDNKENQLGTIGATGGYEGSLHYQRRKLTLGSDNQLSFGSWNSSLSYSETDNKGRLI
TTDSVPAGSAAAGQKRRLENTNVILDSKLVAPVGESHLVTIGGQYWNATMKDGVVLANDGNKFKQDSWALFSEDEWRLLD
SLALTYGARYEYHETFGGHVSPRAYLVWNALDDLTIKGGVSTGYKTPSLAQLHNGVSGVTNQGTDTVIGNPNLKPEESTN
TELGVYYENYTGFAANATLFNNHFRNKIDSYSVSTNPAISTYRNIGKAVTQGVELGSKIPLWSEDWTLNVNYTFTDSEQK
GGLNPGAPLTNTPKHMANARLNWNVNDNLSTWLKAEYRDKTARYTQNYSNLPASQKAAYDDKGAYFKSFTVLNWGGSYKV
SKDVTLNGAVNNLLDKDFTSGVRTYGSGRGAFTTADYYSFNRVTSGSVLPGRNYWVSVNVNF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
r4 AAC61730.1 exogenous ferric siderophore receptor R4 Not tested PAI I CFT073 Protein 1e-173 55
iha AAF36432.2 adhesin Virulence TAI Protein 1e-175 54
Z1178 NP_286713.1 bifunctional enterobactin receptor/adhesin protein Virulence TAI Protein 1e-175 54
Z1617 NP_287121.1 bifunctional enterobactin receptor/adhesin protein Not tested TAI Protein 1e-175 54
c3610 NP_755485.1 bifunctional enterobactin receptor/adhesin protein Not tested PAI I CFT073 Protein 1e-175 54
ECUMN_3356 YP_002414032.1 bifunctional enterobactin receptor/adhesin protein Virulence Not named Protein 1e-175 54
unnamed CAC39288.1 hypothetical protein Not tested LPA Protein 8e-174 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pecwa_1930 YP_003259317.1 TonB-dependent receptor VFG1731 Protein 6e-176 54