Gene Information

Name : fliP (Pecwa_1881)
Accession : YP_003259269.1
Strain : Pectobacterium wasabiae WPP163
Genome accession: NC_013421
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2042823 - 2043599 bp
Length : 777 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGAGTGCTTTGCCTAAATATTTTCGTATCACTACTTTGCTTCGTGCATTGCGCTACAGTTTAGCCATCAGTTTATTGTT
CATGGCGCCATCGGTATGGGCACAACTTCCTGGAATTGTGACTCAACCATTACCTAATGGCGGACAAAGTTGGACGTTAC
CAGTACAGACGTTGGTTTTCCTCACGTCATTAACGTTTATCCCTGCCGCATTGCTGATGATGACCAGTTTCACCCGAATC
ATCATCGTACTAAGTTTGTTACGTAATGCCTTGGGGACACCCACTGCGCCACCAAACCAAGTGTTGTTGGGATTGACGCT
GTTCCTGACATTTTTTGTCATGTCGCCAGTATTAAACCGCGTTTATGAAGAAGCCTACCTTCCATTCAGTCAGGATCAAA
TCAGTATGGAAGTCGCCATTGAACGCGGCGCGGAACCAGTGCGTGAGTTCATGCTGCGGCAGACGCGGGAAACCGATCTA
GCACTGTTTACCAGACTGGCAGAAATTCCAGAGATTCAGGGGCCTGAAGCAGTACCTATGCGCGTGCTTCTCCCCGCATT
TGTAACAAGTGAGTTAAAAACAGCTTTCCAGATTGGCTTCACTGTCTTTATTCCTTTTCTTATCATCGACCTCGTTGTTG
CCAGTGTACTGATGGCTCTGGGGATGATGATGGTTCCTCCGGCAACTATTTCTTTGCCTTTTAAACTCATGCTTTTCGTA
TTAGTCGATGGTTGGCAACTGCTACTCGGTTCATTAGCACAAAGTTTTTATAGTTAG

Protein sequence : 
MSALPKYFRITTLLRALRYSLAISLLFMAPSVWAQLPGIVTQPLPNGGQSWTLPVQTLVFLTSLTFIPAALLMMTSFTRI
IIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYEEAYLPFSQDQISMEVAIERGAEPVREFMLRQTRETDL
ALFTRLAEIPEIQGPEAVPMRVLLPAFVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFV
LVDGWQLLLGSLAQSFYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-23 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-23 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-23 45
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-25 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-19 44
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-19 44
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-18 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-18 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-26 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-28 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 9e-26 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-28 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-28 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-28 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 6e-28 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 6e-28 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-27 41
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 4e-27 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 4e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_003259269.1 flagellar biosynthesis protein FliP VFG2338 Protein 4e-86 84
fliP YP_003259269.1 flagellar biosynthesis protein FliP VFG2494 Protein 2e-69 69
fliP YP_003259269.1 flagellar biosynthesis protein FliP VFG2016 Protein 8e-53 57
fliP YP_003259269.1 flagellar biosynthesis protein FliP VFG1259 Protein 1e-55 57
fliP YP_003259269.1 flagellar biosynthesis protein FliP VFG0188 Protein 1e-27 44
fliP YP_003259269.1 flagellar biosynthesis protein FliP VFG0044 Protein 7e-28 42